| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cccctcgg | 8 | ||
| VMR_0499 | mdv2-miR-m19-5p | 1 | ........ | 8 | 100 |
| VMR_1182 | sv40-miR-s1-5p | 7 | ......__ | 2 | 75 |
| VMR_0540 | mghv-miR-m1-2-5p | 7 | ......__ | 2 | 75 |
| VMR_0518 | mdv2-miR-m28* | 6 | _......_ | 1 | 75 |
| VMR_0286 | hsv1-miR-56054b | 3 | __...... | 8 | 75 |
| VMR_0153 | hbv-miR-b14rc-3p | 7 | ......__ | 2 | 75 |
| VMR_0152 | hbv-miR-b14rc-3p | 8 | ......__ | 3 | 75 |
| VMR_0151 | hbv-miR-b14rc-3p | 7 | ......__ | 2 | 75 |
| VMR_0150 | hbv-miR-b14rc-3p | 8 | ......__ | 3 | 75 |
| VMR_0149 | hbv-miR-b14rc-3p | 8 | ......__ | 3 | 75 |
