| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cccgtcag | 8 | ||
| VMR_0680 | prv-miR-2-5p | 1 | ........ | 8 | 100 |
| VMR_0523 | mdv2-miR-m30* | 8 | .a...... | 1 | 87 |
| VMR_0927 | rcmv-miR-r6-1 | 2 | ......__ | 7 | 75 |
| VMR_0880 | rcmv-miR-orilyt-1 | 6 | ......__ | 1 | 75 |
| VMR_0879 | rcmv-miR-orilyt-1 | 6 | ......__ | 1 | 75 |
