Result for your query miRNA sequence
>rhcmv-miR-rh96-3
cgggccaa
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap 


Acc numbermiRNAStartAlignmentEnd% Identity
Query1cgggccaa8
VMR_0954  rhcmv-miR-rh96-3 1........8100
VMR_0032  bhv1-miR-b9 8........1100