| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cggtgaag | 8 | ||
| VMR_0424 | mcmv-miR-m01-3 | 1 | ........ | 8 | 100 |
| VMR_0993 | rlcv-miR-rl1-22-3p | 6 | ......__ | 1 | 75 |
| VMR_0521 | mdv2-miR-m29-5p | 7 | __...... | 2 | 75 |
| VMR_0285 | hsv1-miR-55593 | 7 | _......_ | 2 | 75 |
| VMR_0220 | hbv-miR-b8-5p | 6 | __...... | 1 | 75 |
| VMR_0217 | hbv-miR-b8-5p | 7 | __...... | 2 | 75 |
| VMR_0214 | hbv-miR-b8-5p | 7 | __...... | 2 | 75 |
| VMR_0213 | hbv-miR-b8-5p | 8 | __...... | 3 | 75 |
| VMR_0210 | hbv-miR-b8-5p | 8 | __...... | 3 | 75 |
| VMR_0132 | ebv-miR-bart5_-1_5 | 3 | _......_ | 8 | 75 |
