| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgtgtgct | 8 | ||
| VMR_1239 | tumv-miR-s57 | 1 | ........ | 8 | 100 |
| VMR_0688 | prv-miR-3-3p | 7 | ......._ | 1 | 87 |
| VMR_0687 | prv-miR-3-3p | 7 | ......._ | 1 | 87 |
| VMR_0686 | prv-miR-3-3p | 8 | ......._ | 2 | 87 |
| VMR_0685 | prv-miR-3-3p | 8 | ......._ | 2 | 87 |
| VMR_0890 | rcmv-miR-r111.1-1 | 3 | __...... | 8 | 75 |
| VMR_0449 | mcv-miR-m1-3p | 1 | __...... | 6 | 75 |
| VMR_0345 | hvsa-miR-hsur2-5p | 3 | __...... | 8 | 75 |
| VMR_0099 | ebv-miR-bart11-3p | 8 | _......_ | 3 | 75 |
