| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctccgcgg | 8 | ||
| VMR_0064 | dev-miR-d12-3p | 1 | ........ | 8 | 100 |
| VMR_0064 | dev-miR-d12-3p | 8 | __...... | 3 | 75 |
| VMR_0594 | prv-miR-10-1 | 1 | _....... | 7 | 87 |
| VMR_0594 | prv-miR-10-1 | 8 | _....... | 2 | 87 |
| VMR_1135 | rrv-miR-rr1-6-5p | 6 | _......_ | 1 | 75 |
| VMR_1134 | rrv-miR-rr1-6-5p | 6 | _......_ | 1 | 75 |
| VMR_1129 | rrv-miR-rr1-6 | 6 | _......_ | 1 | 75 |
| VMR_0913 | rcmv-miR-r111.2-6 | 8 | _......_ | 3 | 75 |
| VMR_0912 | rcmv-miR-r111.2-6 | 8 | _......_ | 3 | 75 |
| VMR_0911 | rcmv-miR-r111.2-6 | 8 | _......_ | 3 | 75 |
| VMR_0369 | hvt-miR-h4 | 7 | ......__ | 2 | 75 |
| VMR_0349 | hvsa-miR-hsur5-5p | 1 | _......_ | 6 | 75 |
