| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctgggtat | 8 | ||
| VMR_0417 | kshv-miR-k12-9 | 1 | ........ | 8 | 100 |
| VMR_1262 | tumv-miR-s78 | 2 | _......_ | 7 | 75 |
| VMR_1072 | rrv-miR-rr1-11-5p | 7 | ......__ | 2 | 75 |
| VMR_0418 | kshv-miR-k12-9* | 6 | ......__ | 1 | 75 |
