| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctggtgtt | 8 | ||
| VMR_1273 | wssv-miR129 | 1 | ........ | 8 | 100 |
| VMR_0396 | kshv-miR-k12-10b | 1 | _....... | 7 | 87 |
| VMR_0391 | kshv-miR-k10b_+1_5 | 2 | _....... | 8 | 87 |
| VMR_1216 | tumv-miR-s36 | 1 | __...... | 6 | 75 |
| VMR_1167 | sgiv-miR-12 | 8 | _......_ | 3 | 75 |
| VMR_0782 | prv-miR-8-3p | 1 | __...... | 6 | 75 |
| VMR_0532 | mghv-miR-m1-12 | 3 | _......_ | 8 | 75 |
| VMR_0371 | hvt-miR-h5 | 2 | ......__ | 7 | 75 |
| VMR_0226 | hcmv-miR-ul22a* | 7 | ......__ | 2 | 75 |
