| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cttgtct | 7 | ||
| VMR_0381 | iltv-miR-i3 | 2 | ....... | 8 | 100 |
| VMR_1035 | rlcv-miR-rl1-33-5p | 3 | _...... | 8 | 85 |
| VMR_0245 | hcmv-miR-us5-1 | 7 | ......_ | 2 | 85 |
