| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gaaccaa | 7 | ||
| VMR_1229 | tumv-miR-s48 | 2 | ....... | 8 | 100 |
| VMR_0470 | mdv1-miR-m4* | 8 | ......_ | 3 | 85 |
| VMR_0326 | hsv2-miR-h20 | 7 | _...... | 2 | 85 |
| VMR_0278 | hsv1-miR-2932 | 7 | _...... | 2 | 85 |
