| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gagaagtt | 8 | ||
| VMR_1265 | tumv-miR-s80 | 1 | ........ | 8 | 100 |
| VMR_1275 | wssv-miR144 | 1 | ......._ | 7 | 87 |
| VMR_1279 | wssv-miR16 | 3 | _......_ | 8 | 75 |
| VMR_1278 | wssv-miR158 | 6 | ......__ | 1 | 75 |
| VMR_0671 | prv-miR-2-5p | 7 | ......__ | 2 | 75 |
| VMR_0583 | ohv2-miR-5 | 2 | __...... | 7 | 75 |
| VMR_0445 | mcmv-miR-m88-1 | 2 | _......_ | 7 | 75 |
| VMR_0384 | iltv-miR-i5* | 6 | ......__ | 1 | 75 |
| VMR_0351 | hvt-miR-h10 | 8 | ......__ | 3 | 75 |
