| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gctggga | 7 | ||
| VMR_0643 | prv-miR-11-1 | 1 | ....... | 7 | 100 |
| VMR_0638 | prv-miR-11-1 | 1 | ....... | 7 | 100 |
| VMR_0637 | prv-miR-11-1 | 2 | ....... | 8 | 100 |
| VMR_0630 | prv-miR-11-1 | 1 | ....... | 7 | 100 |
| VMR_0629 | prv-miR-11-1 | 2 | ....... | 8 | 100 |
| VMR_0614 | prv-miR-11-1 | 1 | ....... | 7 | 100 |
| VMR_1072 | rrv-miR-rr1-11-5p | 8 | ......_ | 3 | 85 |
| VMR_0649 | prv-miR-11-1 | 3 | ......_ | 8 | 85 |
| VMR_0647 | prv-miR-11-1 | 1 | _...... | 6 | 85 |
| VMR_0646 | prv-miR-11-1 | 3 | ......_ | 8 | 85 |
| VMR_0642 | prv-miR-11-1 | 3 | ......_ | 8 | 85 |
| VMR_0636 | prv-miR-11-1 | 3 | ......_ | 8 | 85 |
| VMR_0631 | prv-miR-11-1 | 1 | _...... | 6 | 85 |
| VMR_0628 | prv-miR-11-1 | 3 | ......_ | 8 | 85 |
| VMR_0622 | prv-miR-11-1 | 1 | _...... | 6 | 85 |
| VMR_0621 | prv-miR-11-1 | 3 | ......_ | 8 | 85 |
| VMR_0619 | prv-miR-11-1 | 3 | ......_ | 8 | 85 |
| VMR_0613 | prv-miR-11-1 | 3 | ......_ | 8 | 85 |
| VMR_0610 | prv-miR-11-1 | 3 | ......_ | 8 | 85 |
| VMR_0418 | kshv-miR-k12-9* | 7 | ......_ | 2 | 85 |
| VMR_0305 | hsv1-miR-h3 | 1 | _...... | 6 | 85 |
