| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggagggg | 7 | ||
| VMR_0153 | hbv-miR-b14rc-3p | 1 | ....... | 7 | 100 |
| VMR_0152 | hbv-miR-b14rc-3p | 2 | ....... | 8 | 100 |
| VMR_0151 | hbv-miR-b14rc-3p | 1 | ....... | 7 | 100 |
| VMR_0150 | hbv-miR-b14rc-3p | 2 | ....... | 8 | 100 |
| VMR_0149 | hbv-miR-b14rc-3p | 2 | ....... | 8 | 100 |
| VMR_1182 | sv40-miR-s1-5p | 2 | _...... | 7 | 85 |
| VMR_0841 | prv-miR-9-3p | 6 | ......_ | 1 | 85 |
| VMR_0838 | prv-miR-9-3p | 6 | ......_ | 1 | 85 |
| VMR_0835 | prv-miR-9-3p | 6 | ......_ | 1 | 85 |
| VMR_0833 | prv-miR-9-3p | 6 | ......_ | 1 | 85 |
| VMR_0540 | mghv-miR-m1-2-5p | 2 | _...... | 7 | 85 |
| VMR_0499 | mdv2-miR-m19-5p | 6 | _...... | 1 | 85 |
| VMR_0054 | blv-miR-b5-5p | 2 | ......_ | 7 | 85 |
