| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggggacgg | 8 | ||
| VMR_0615 | prv-miR-11-1 | 1 | ........ | 8 | 100 |
| VMR_0639 | prv-miR-11-1 | 1 | _....... | 7 | 87 |
| VMR_0632 | prv-miR-11-1 | 1 | _....... | 7 | 87 |
| VMR_0623 | prv-miR-11-1 | 1 | _....... | 7 | 87 |
| VMR_0927 | rcmv-miR-r6-1 | 8 | __...... | 3 | 75 |
| VMR_0624 | prv-miR-11-1 | 1 | __...... | 6 | 75 |
| VMR_0620 | prv-miR-11-1 | 3 | ......__ | 8 | 75 |
| VMR_0611 | prv-miR-11-1 | 3 | ......__ | 8 | 75 |
| VMR_0585 | ohv2-miR-61-1 | 3 | ......__ | 8 | 75 |
| VMR_0293 | hsv1-miR-h12 | 3 | _......_ | 8 | 75 |
