| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gtaactt | 7 | ||
| VMR_1049 | rlcv-miR-rl1-35-3p | 2 | ....... | 8 | 100 |
| VMR_1048 | rlcv-miR-rl1-35-3p | 1 | ....... | 7 | 100 |
| VMR_1047 | rlcv-miR-rl1-35-3p | 2 | ....... | 8 | 100 |
| VMR_1046 | rlcv-miR-rl1-35-3p | 2 | ....... | 8 | 100 |
| VMR_1045 | rlcv-miR-rl1-35-3p | 1 | ....... | 7 | 100 |
| VMR_1044 | rlcv-miR-rl1-35-3p | 2 | ....... | 8 | 100 |
| VMR_1043 | rlcv-miR-rl1-35-3p | 2 | ....... | 8 | 100 |
| VMR_1042 | rlcv-miR-rl1-35-3p | 2 | ....... | 8 | 100 |
| VMR_0102 | ebv-miR-bart13 | 2 | ....... | 8 | 100 |
| VMR_1032 | rlcv-miR-rl1-32-5p | 1 | _...... | 6 | 85 |
| VMR_0583 | ohv2-miR-5 | 8 | _...... | 3 | 85 |
| VMR_0455 | mdv1-miR-m11-3p | 8 | ......_ | 3 | 85 |
