| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gtgacctc | 8 | ||
| VMR_0482 | mdv1-miR-m8-3p | 1 | ........ | 8 | 100 |
| VMR_1101 | rrv-miR-rr1-15-5p | 8 | ......g. | 1 | 87 |
| VMR_0432 | mcmv-miR-m108-2-5p.1 | 8 | ......g. | 1 | 87 |
| VMR_0928 | rcmv-miR-r6-1 | 3 | __...... | 8 | 75 |
| VMR_0926 | rcmv-miR-r6-1 | 3 | __...... | 8 | 75 |
| VMR_0925 | rcmv-miR-r6-1 | 3 | __...... | 8 | 75 |
| VMR_0429 | mcmv-miR-m107-1-5p | 7 | ......__ | 2 | 75 |
| VMR_0398 | kshv-miR-k12-11* | 6 | ......__ | 1 | 75 |
| VMR_0259 | hiv1-miR-n367 | 3 | _......_ | 8 | 75 |
