| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gttcacca | 8 | ||
| VMR_0285 | hsv1-miR-55593 | 1 | ........ | 8 | 100 |
| VMR_0984 | rlcv-miR-rl1-19-3p | 1 | .a...... | 8 | 87 |
| VMR_0983 | rlcv-miR-rl1-19-3p | 1 | .a...... | 8 | 87 |
| VMR_0441 | mcmv-miR-m55-1 | 8 | .a...... | 1 | 87 |
| VMR_1274 | wssv-miR143 | 1 | __...... | 6 | 75 |
| VMR_1207 | tumv-miR-s28 | 6 | __...... | 1 | 75 |
| VMR_1180 | sgiv-miR-homohsv | 2 | ......__ | 7 | 75 |
| VMR_0986 | rlcv-miR-rl1-19-3p | 2 | __...... | 7 | 75 |
| VMR_0985 | rlcv-miR-rl1-19-3p | 2 | __...... | 7 | 75 |
| VMR_0424 | mcmv-miR-m01-3 | 7 | _......_ | 2 | 75 |
| VMR_0335 | hsv2-miR-h4-5p | 3 | ......__ | 8 | 75 |
| VMR_0226 | hcmv-miR-ul22a* | 1 | __...... | 6 | 75 |
| VMR_0132 | ebv-miR-bart5_-1_5 | 8 | _......_ | 3 | 75 |
