| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gttggtgg | 8 | ||
| VMR_1268 | tumv-miR-s9 | 1 | ........ | 8 | 100 |
| VMR_1249 | tumv-miR-s66 | 1 | ........ | 8 | 100 |
| VMR_1274 | wssv-miR143 | 8 | ......._ | 2 | 87 |
| VMR_1241 | tumv-miR-s59 | 1 | .g...... | 8 | 87 |
| VMR_0552 | mghv-miR-m1-8* | 8 | ......__ | 3 | 75 |
| VMR_0532 | mghv-miR-m1-12 | 2 | _......_ | 7 | 75 |
| VMR_0391 | kshv-miR-k10b_+1_5 | 1 | _......_ | 6 | 75 |
