| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tatcggag | 8 | ||
| VMR_1004 | rlcv-miR-rl1-24-3p | 1 | ........ | 8 | 100 |
| VMR_0112 | ebv-miR-bart18-3p | 1 | ......._ | 7 | 87 |
| VMR_1222 | tumv-miR-s41 | 1 | _......_ | 6 | 75 |
| VMR_0905 | rcmv-miR-r111.2-3 | 2 | _......_ | 7 | 75 |
| VMR_0904 | rcmv-miR-r111.2-3 | 1 | _......_ | 6 | 75 |
| VMR_0903 | rcmv-miR-r111.2-3 | 2 | _......_ | 7 | 75 |
| VMR_0342 | hsv2-miR-h9-5p | 2 | __...... | 7 | 75 |
| VMR_0026 | bhv1-miR-b5 | 2 | __...... | 7 | 75 |
| VMR_0009 | bfv-miR-bf1-5p | 2 | __...... | 7 | 75 |
| VMR_0008 | bfv-miR-bf1-5p | 2 | __...... | 7 | 75 |
| VMR_0007 | bfv-miR-bf1-5p | 2 | __...... | 7 | 75 |
| VMR_0006 | bfv-miR-bf1-5p | 2 | __...... | 7 | 75 |
