| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcctgtag | 8 | ||
| VMR_0970 | rlcv-miR-rl1-15-3p | 1 | ........ | 8 | 100 |
| VMR_0101 | ebv-miR-bart12 | 1 | ......g. | 8 | 87 |
| VMR_0536 | mghv-miR-m1-14-3p | 8 | __...... | 3 | 75 |
| VMR_0466 | mdv1-miR-m31 | 8 | __...... | 3 | 75 |
| VMR_0401 | kshv-miR-k12-2 | 3 | __...... | 8 | 75 |
| VMR_0392 | kshv-miR-k12-1 | 8 | _......_ | 3 | 75 |
