| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tcgaaatc | 8 | ||
| VMR_0453 | mdv1-miR-m10-3p | 1 | ........ | 8 | 100 |
| VMR_1076 | rrv-miR-rr1-12-3p | 6 | _......_ | 1 | 75 |
| VMR_1075 | rrv-miR-rr1-12-3p | 6 | _......_ | 1 | 75 |
| VMR_1074 | rrv-miR-rr1-12-3p | 6 | _......_ | 1 | 75 |
| VMR_1073 | rrv-miR-rr1-12-3p | 6 | _......_ | 1 | 75 |
| VMR_0895 | rcmv-miR-r111.1-2 | 1 | ......__ | 6 | 75 |
| VMR_0894 | rcmv-miR-r111.1-2 | 1 | ......__ | 6 | 75 |
| VMR_0893 | rcmv-miR-r111.1-2 | 1 | ......__ | 6 | 75 |
