| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttaattgt | 8 | ||
| VMR_0086 | dev-miR-d4-3p | 1 | ........ | 8 | 100 |
| VMR_1088 | rrv-miR-rr1-13-5p | 1 | _......_ | 6 | 75 |
| VMR_1085 | rrv-miR-rr1-13-5p | 1 | _......_ | 6 | 75 |
| VMR_1084 | rrv-miR-rr1-13-5p | 1 | _......_ | 6 | 75 |
| VMR_1006 | rlcv-miR-rl1-25-3p | 8 | __...... | 3 | 75 |
