| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttagatgc | 8 | ||
| VMR_0508 | mdv2-miR-m24 | 1 | ........ | 8 | 100 |
| VMR_0510 | mdv2-miR-m24-3p_-1_5 | 1 | _....... | 7 | 87 |
| VMR_1260 | tumv-miR-s76 | 2 | ......__ | 7 | 75 |
| VMR_0982 | rlcv-miR-rl1-18-5p | 1 | _......_ | 6 | 75 |
| VMR_1041 | rlcv-miR-rl1-34-5p | 1 | _......_ | 6 | 75 |
| VMR_1040 | rlcv-miR-rl1-34-5p | 1 | _......_ | 6 | 75 |
| VMR_0981 | rlcv-miR-rl1-18-5p | 1 | _......_ | 6 | 75 |
| VMR_0980 | rlcv-miR-rl1-18-5p | 1 | _......_ | 6 | 75 |
| VMR_0492 | mdv2-miR-m16* | 1 | __...... | 6 | 75 |
| VMR_0109 | ebv-miR-bart16 | 1 | ......__ | 6 | 75 |
