| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttaggaca | 8 | ||
| VMR_0320 | hsv2-miR-h11 | 1 | ........ | 8 | 100 |
| VMR_0292 | hsv1-miR-h11 | 1 | ........ | 8 | 100 |
| VMR_0493 | mdv2-miR-m17 | 1 | _....... | 7 | 87 |
| VMR_0322 | hsv2-miR-h12 | 1 | ......._ | 7 | 87 |
