| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttttagtg | 8 | ||
| VMR_1058 | rlcv-miR-rl1-6-5p | 1 | ........ | 8 | 100 |
| VMR_0344 | hvsa-miR-hsur2-3p | 1 | ......a. | 8 | 87 |
| VMR_0108 | ebv-miR-bart1-5p | 1 | .c...... | 8 | 87 |
| VMR_0095 | ebv-miR-bart1 | 1 | .c...... | 8 | 87 |
| VMR_0390 | kshv-miR-k10a_+1_5 | 1 | __...... | 6 | 75 |
