BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-5-5p
(8 letters)
Database: /home/users/abid/BLAST/VIRMIRNA
1308 sequences; 10,464 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
VMR_1056 | rlcv-miR-rl1-5-5p | Rhesus lymphocryptovirus 16 0.25
VMR_1054 | rlcv-miR-rl1-4-5p | Rhesus lymphocryptovirus 14 0.99
VMR_0572 | ohv2-miR-17-28 | Ovine herpesvirus 2 14 0.99
VMR_0127 | ebv-miR-bart3-5p* | Epstein Barr virus 14 0.99
VMR_0125 | ebv-miR-bart3* | Epstein Barr virus 14 0.99
>VMR_1056 | rlcv-miR-rl1-5-5p | Rhesus lymphocryptovirus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aacctagt 8
||||||||
Sbjct: 1 aacctagt 8
>VMR_1054 | rlcv-miR-rl1-4-5p | Rhesus lymphocryptovirus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acctagt 8
|||||||
Sbjct: 1 acctagt 7
>VMR_0572 | ohv2-miR-17-28 | Ovine herpesvirus 2
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aacctag 7
|||||||
Sbjct: 8 aacctag 2
>VMR_0127 | ebv-miR-bart3-5p* | Epstein Barr virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acctagt 8
|||||||
Sbjct: 1 acctagt 7
>VMR_0125 | ebv-miR-bart3* | Epstein Barr virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acctagt 8
|||||||
Sbjct: 1 acctagt 7
Database: /home/users/abid/BLAST/VIRMIRNA
Posted date: Sep 8, 2014 7:41 PM
Number of letters in database: 10,464
Number of sequences in database: 1308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 11
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 100.0: 5
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 5
Length of query: 8
Length of database: 10,464
Length adjustment: 4
Effective length of query: 4
Effective length of database: 5232
Effective search space: 20928
Effective search space used: 20928
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)