BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hsv2-miR-h6
         (8 letters)

Database: /home/users/abid/BLAST/VIRMIRNA 
           1308 sequences; 10,464 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VMR_0337 | hsv2-miR-h6 | Herpes simplex virus 2                        16   0.25 
VMR_0490 | mdv2-miR-m15* | Mareks disease virus type 2                 14   0.99 
VMR_0290 | hsv1-miR-h1 | Herpes simplex virus 1                        14   0.99 
VMR_1019 | rlcv-miR-rl1-28-5p | Rhesus lymphocryptovirus               12   3.9  
VMR_1020 | rlcv-miR-rl1-28-5p | Rhesus lymphocryptovirus               12   3.9  
VMR_0461 | mdv1-miR-m13 | Mareks disease virus type 1                  12   3.9  
VMR_0450 | mcv-miR-m1-5p | Merkel cell polyomavirus                    12   3.9  
VMR_0379 | iltv-miR-i1* | Infectious laryngotracheitis virus           12   3.9  
VMR_0314 | hsv1-miR-h6-5p | Herpes simplex virus 1                     12   3.9  
>VMR_0337 | hsv2-miR-h6 | Herpes simplex virus 2
          Length = 8

 Score = 16.4 bits (8), Expect = 0.25
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 aatggaag 8
         ||||||||
Sbjct: 1 aatggaag 8
>VMR_0490 | mdv2-miR-m15* | Mareks disease virus type 2
          Length = 8

 Score = 14.4 bits (7), Expect = 0.99
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 atggaag 8
         |||||||
Sbjct: 2 atggaag 8
>VMR_0290 | hsv1-miR-h1 | Herpes simplex virus 1
          Length = 8

 Score = 14.4 bits (7), Expect = 0.99
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 atggaag 8
         |||||||
Sbjct: 2 atggaag 8
>VMR_1019 | rlcv-miR-rl1-28-5p | Rhesus lymphocryptovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 3 tggaag 8
         ||||||
Sbjct: 1 tggaag 6
>VMR_1020 | rlcv-miR-rl1-28-5p | Rhesus lymphocryptovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 3 tggaag 8
         ||||||
Sbjct: 1 tggaag 6
>VMR_0461 | mdv1-miR-m13 | Mareks disease virus type 1
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 atggaa 7
         ||||||
Sbjct: 3 atggaa 8
>VMR_0450 | mcv-miR-m1-5p | Merkel cell polyomavirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 3 tggaag 8
         ||||||
Sbjct: 1 tggaag 6
>VMR_0379 | iltv-miR-i1* | Infectious laryngotracheitis virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 atggaa 7
         ||||||
Sbjct: 8 atggaa 3
>VMR_0314 | hsv1-miR-h6-5p | Herpes simplex virus 1
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 3 tggaag 8
         ||||||
Sbjct: 3 tggaag 8
  Database: /home/users/abid/BLAST/VIRMIRNA
    Posted date:  Sep 8, 2014  7:41 PM
  Number of letters in database: 10,464
  Number of sequences in database:  1308
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 14
Number of extensions: 10
Number of successful extensions: 9
Number of sequences better than 100.0: 9
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 10,464
Length adjustment: 4
Effective length of query: 4
Effective length of database: 5232
Effective search space:    20928
Effective search space used:    20928
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)