BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-7-3p
(8 letters)
Database: /home/users/abid/BLAST/VIRMIRNA
1308 sequences; 10,464 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
VMR_0758 | prv-miR-7-3p | Pseudorabies virus 16 0.25
VMR_0757 | prv-miR-7-3p | Pseudorabies virus 16 0.25
VMR_0756 | prv-miR-7-3p | Pseudorabies virus 16 0.25
VMR_0754 | prv-miR-7-3p | Pseudorabies virus 16 0.25
VMR_1241 | tumv-miR-s59 | Turnip mosaic virus 12 3.9
VMR_1090 | rrv-miR-rr1-1-3p | Rhesus rhadinovirus 12 3.9
VMR_1067 | rrv-miR-rr1-1* | Rhesus rhadinovirus 12 3.9
VMR_0993 | rlcv-miR-rl1-22-3p | Rhesus lymphocryptovirus 12 3.9
VMR_0808 | prv-miR-8-5p | Pseudorabies virus 12 3.9
VMR_0548 | mghv-miR-m1-6* | Mouse gammaherpesvirus 68 12 3.9
>VMR_0758 | prv-miR-7-3p | Pseudorabies virus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 accaccgt 8
||||||||
Sbjct: 1 accaccgt 8
>VMR_0757 | prv-miR-7-3p | Pseudorabies virus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 accaccgt 8
||||||||
Sbjct: 1 accaccgt 8
>VMR_0756 | prv-miR-7-3p | Pseudorabies virus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 accaccgt 8
||||||||
Sbjct: 1 accaccgt 8
>VMR_0754 | prv-miR-7-3p | Pseudorabies virus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 accaccgt 8
||||||||
Sbjct: 1 accaccgt 8
>VMR_1241 | tumv-miR-s59 | Turnip mosaic virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accacc 6
||||||
Sbjct: 6 accacc 1
>VMR_1090 | rrv-miR-rr1-1-3p | Rhesus rhadinovirus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccaccg 7
||||||
Sbjct: 3 ccaccg 8
>VMR_1067 | rrv-miR-rr1-1* | Rhesus rhadinovirus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccaccg 7
||||||
Sbjct: 3 ccaccg 8
>VMR_0993 | rlcv-miR-rl1-22-3p | Rhesus lymphocryptovirus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 3 caccgt 8
||||||
Sbjct: 2 caccgt 7
>VMR_0808 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccaccg 7
||||||
Sbjct: 6 ccaccg 1
>VMR_0548 | mghv-miR-m1-6* | Mouse gammaherpesvirus 68
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accacc 6
||||||
Sbjct: 3 accacc 8
Database: /home/users/abid/BLAST/VIRMIRNA
Posted date: Sep 8, 2014 7:41 PM
Number of letters in database: 10,464
Number of sequences in database: 1308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 20
Number of extensions: 12
Number of successful extensions: 10
Number of sequences better than 100.0: 10
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 10
Length of query: 8
Length of database: 10,464
Length adjustment: 4
Effective length of query: 4
Effective length of database: 5232
Effective search space: 20928
Effective search space used: 20928
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)