BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= blv-miR-b3-5p
(8 letters)
Database: /home/users/abid/BLAST/VIRMIRNA
1308 sequences; 10,464 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
VMR_0046 | blv-miR-b3-5p | Bovine leukemia virus 16 0.25
VMR_0842 | prv-miR-9-3p | Pseudorabies virus 12 3.9
VMR_0839 | prv-miR-9-3p | Pseudorabies virus 12 3.9
VMR_0836 | prv-miR-9-3p | Pseudorabies virus 12 3.9
VMR_0834 | prv-miR-9-3p | Pseudorabies virus 12 3.9
VMR_0832 | prv-miR-9-3p | Pseudorabies virus 12 3.9
VMR_0540 | mghv-miR-m1-2-5p | Mouse gammaherpesvirus 68 12 3.9
VMR_0231 | hcmv-miR-ul70-3p | Human cytomegalovirus 12 3.9
VMR_0074 | dev-miR-d18-3p | Duck enteritis virus 12 3.9
>VMR_0046 | blv-miR-b3-5p | Bovine leukemia virus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atccccct 8
||||||||
Sbjct: 1 atccccct 8
>VMR_0842 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccccc 7
||||||
Sbjct: 3 tccccc 8
>VMR_0839 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccccc 7
||||||
Sbjct: 3 tccccc 8
>VMR_0836 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccccc 7
||||||
Sbjct: 3 tccccc 8
>VMR_0834 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccccc 7
||||||
Sbjct: 3 tccccc 8
>VMR_0832 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccccc 7
||||||
Sbjct: 3 tccccc 8
>VMR_0540 | mghv-miR-m1-2-5p | Mouse gammaherpesvirus 68
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 3 ccccct 8
||||||
Sbjct: 8 ccccct 3
>VMR_0231 | hcmv-miR-ul70-3p | Human cytomegalovirus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcccc 6
||||||
Sbjct: 6 atcccc 1
>VMR_0074 | dev-miR-d18-3p | Duck enteritis virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcccc 6
||||||
Sbjct: 3 atcccc 8
Database: /home/users/abid/BLAST/VIRMIRNA
Posted date: Sep 8, 2014 7:41 PM
Number of letters in database: 10,464
Number of sequences in database: 1308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 19
Number of extensions: 17
Number of successful extensions: 9
Number of sequences better than 100.0: 9
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 10,464
Length adjustment: 4
Effective length of query: 4
Effective length of database: 5232
Effective search space: 20928
Effective search space used: 20928
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)