BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv2-miR-h6
(7 letters)
Database: /home/users/abid/BLAST/VIRMIRNA
1308 sequences; 10,464 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
VMR_0490 | mdv2-miR-m15* | Mareks disease virus type 2 14 0.74
VMR_0337 | hsv2-miR-h6 | Herpes simplex virus 2 14 0.74
VMR_0290 | hsv1-miR-h1 | Herpes simplex virus 1 14 0.74
VMR_1019 | rlcv-miR-rl1-28-5p | Rhesus lymphocryptovirus 12 2.9
VMR_1020 | rlcv-miR-rl1-28-5p | Rhesus lymphocryptovirus 12 2.9
VMR_0461 | mdv1-miR-m13 | Mareks disease virus type 1 12 2.9
VMR_0450 | mcv-miR-m1-5p | Merkel cell polyomavirus 12 2.9
VMR_0379 | iltv-miR-i1* | Infectious laryngotracheitis virus 12 2.9
VMR_0314 | hsv1-miR-h6-5p | Herpes simplex virus 1 12 2.9
>VMR_0490 | mdv2-miR-m15* | Mareks disease virus type 2
Length = 8
Score = 14.4 bits (7), Expect = 0.74
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atggaag 7
|||||||
Sbjct: 2 atggaag 8
>VMR_0337 | hsv2-miR-h6 | Herpes simplex virus 2
Length = 8
Score = 14.4 bits (7), Expect = 0.74
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atggaag 7
|||||||
Sbjct: 2 atggaag 8
>VMR_0290 | hsv1-miR-h1 | Herpes simplex virus 1
Length = 8
Score = 14.4 bits (7), Expect = 0.74
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atggaag 7
|||||||
Sbjct: 2 atggaag 8
>VMR_1019 | rlcv-miR-rl1-28-5p | Rhesus lymphocryptovirus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggaag 7
||||||
Sbjct: 1 tggaag 6
>VMR_1020 | rlcv-miR-rl1-28-5p | Rhesus lymphocryptovirus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggaag 7
||||||
Sbjct: 1 tggaag 6
>VMR_0461 | mdv1-miR-m13 | Mareks disease virus type 1
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atggaa 6
||||||
Sbjct: 3 atggaa 8
>VMR_0450 | mcv-miR-m1-5p | Merkel cell polyomavirus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggaag 7
||||||
Sbjct: 1 tggaag 6
>VMR_0379 | iltv-miR-i1* | Infectious laryngotracheitis virus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atggaa 6
||||||
Sbjct: 8 atggaa 3
>VMR_0314 | hsv1-miR-h6-5p | Herpes simplex virus 1
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggaag 7
||||||
Sbjct: 3 tggaag 8
Database: /home/users/abid/BLAST/VIRMIRNA
Posted date: Sep 8, 2014 7:41 PM
Number of letters in database: 10,464
Number of sequences in database: 1308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 13
Number of extensions: 10
Number of successful extensions: 9
Number of sequences better than 100.0: 9
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 9
Length of query: 7
Length of database: 10,464
Length adjustment: 4
Effective length of query: 3
Effective length of database: 5232
Effective search space: 15696
Effective search space used: 15696
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)
