BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-59899
(8 letters)
Database: /home/users/abid/BLAST/VIRMIRNA
1308 sequences; 10,464 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
VMR_0287 | hsv1-miR-59899 | Herpes simplex virus 1 16 0.25
VMR_1052 | rlcv-miR-rl1-35-5p | Rhesus lymphocryptovirus 14 0.99
VMR_1051 | rlcv-miR-rl1-35-5p | Rhesus lymphocryptovirus 14 0.99
VMR_1050 | rlcv-miR-rl1-35-5p | Rhesus lymphocryptovirus 14 0.99
VMR_0892 | rcmv-miR-r111.1-1 | Rat cytomegalovirus 12 3.9
VMR_0891 | rcmv-miR-r111.1-1 | Rat cytomegalovirus 12 3.9
VMR_0889 | rcmv-miR-r111.1-1 | Rat cytomegalovirus 12 3.9
VMR_0793 | prv-miR-8-3p | Pseudorabies virus 12 3.9
VMR_0785 | prv-miR-8-3p | Pseudorabies virus 12 3.9
VMR_0331 | hsv2-miR-h24 | Herpes simplex virus 2 12 3.9
VMR_0233 | hcmv-miR-us22-3p6 | Human cytomegalovirus 12 3.9
VMR_0175 | hbv-miR-b21rc-5p | Herpes B virus 12 3.9
VMR_0174 | hbv-miR-b21rc-5p | Herpes B virus 12 3.9
VMR_0172 | hbv-miR-b21rc-5p | Herpes B virus 12 3.9
>VMR_0287 | hsv1-miR-59899 | Herpes simplex virus 1
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 caccggcg 8
||||||||
Sbjct: 1 caccggcg 8
>VMR_1052 | rlcv-miR-rl1-35-5p | Rhesus lymphocryptovirus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caccggc 7
|||||||
Sbjct: 1 caccggc 7
>VMR_1051 | rlcv-miR-rl1-35-5p | Rhesus lymphocryptovirus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caccggc 7
|||||||
Sbjct: 1 caccggc 7
>VMR_1050 | rlcv-miR-rl1-35-5p | Rhesus lymphocryptovirus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caccggc 7
|||||||
Sbjct: 1 caccggc 7
>VMR_0892 | rcmv-miR-r111.1-1 | Rat cytomegalovirus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caccgg 6
||||||
Sbjct: 3 caccgg 8
>VMR_0891 | rcmv-miR-r111.1-1 | Rat cytomegalovirus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caccgg 6
||||||
Sbjct: 3 caccgg 8
>VMR_0889 | rcmv-miR-r111.1-1 | Rat cytomegalovirus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caccgg 6
||||||
Sbjct: 3 caccgg 8
>VMR_0793 | prv-miR-8-3p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccgg 6
||||||
Sbjct: 8 caccgg 3
>VMR_0785 | prv-miR-8-3p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccgg 6
||||||
Sbjct: 8 caccgg 3
>VMR_0331 | hsv2-miR-h24 | Herpes simplex virus 2
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 3 ccggcg 8
||||||
Sbjct: 3 ccggcg 8
>VMR_0233 | hcmv-miR-us22-3p6 | Human cytomegalovirus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 3 ccggcg 8
||||||
Sbjct: 7 ccggcg 2
>VMR_0175 | hbv-miR-b21rc-5p | Herpes B virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 3 ccggcg 8
||||||
Sbjct: 6 ccggcg 1
>VMR_0174 | hbv-miR-b21rc-5p | Herpes B virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 3 ccggcg 8
||||||
Sbjct: 8 ccggcg 3
>VMR_0172 | hbv-miR-b21rc-5p | Herpes B virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 3 ccggcg 8
||||||
Sbjct: 8 ccggcg 3
Database: /home/users/abid/BLAST/VIRMIRNA
Posted date: Sep 8, 2014 7:41 PM
Number of letters in database: 10,464
Number of sequences in database: 1308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 26
Number of extensions: 21
Number of successful extensions: 14
Number of sequences better than 100.0: 14
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 14
Length of query: 8
Length of database: 10,464
Length adjustment: 4
Effective length of query: 4
Effective length of database: 5232
Effective search space: 20928
Effective search space used: 20928
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)