VIRmiRNA

BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rlcv-miR-rl1-35-5p
         (8 letters)

Database: /home/users/abid/BLAST/VIRMIRNA 
           1308 sequences; 10,464 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VMR_1052 | rlcv-miR-rl1-35-5p | Rhesus lymphocryptovirus               16   0.25 
VMR_1051 | rlcv-miR-rl1-35-5p | Rhesus lymphocryptovirus               16   0.25 
VMR_1050 | rlcv-miR-rl1-35-5p | Rhesus lymphocryptovirus               16   0.25 
VMR_0287 | hsv1-miR-59899 | Herpes simplex virus 1                     14   0.99 
VMR_0103 | ebv-miR-bart13* | Epstein Barr virus                        14   0.99 
VMR_0892 | rcmv-miR-r111.1-1 | Rat cytomegalovirus                     12   3.9  
VMR_0891 | rcmv-miR-r111.1-1 | Rat cytomegalovirus                     12   3.9  
VMR_0889 | rcmv-miR-r111.1-1 | Rat cytomegalovirus                     12   3.9  
VMR_0793 | prv-miR-8-3p | Pseudorabies virus                           12   3.9  
VMR_0785 | prv-miR-8-3p | Pseudorabies virus                           12   3.9  

>VMR_1052 | rlcv-miR-rl1-35-5p | Rhesus lymphocryptovirus
          Length = 8

 Score = 16.4 bits (8), Expect = 0.25
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 caccggct 8
         ||||||||
Sbjct: 1 caccggct 8



>VMR_1051 | rlcv-miR-rl1-35-5p | Rhesus lymphocryptovirus
          Length = 8

 Score = 16.4 bits (8), Expect = 0.25
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 caccggct 8
         ||||||||
Sbjct: 1 caccggct 8



>VMR_1050 | rlcv-miR-rl1-35-5p | Rhesus lymphocryptovirus
          Length = 8

 Score = 16.4 bits (8), Expect = 0.25
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 caccggct 8
         ||||||||
Sbjct: 1 caccggct 8



>VMR_0287 | hsv1-miR-59899 | Herpes simplex virus 1
          Length = 8

 Score = 14.4 bits (7), Expect = 0.99
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 caccggc 7
         |||||||
Sbjct: 1 caccggc 7



>VMR_0103 | ebv-miR-bart13* | Epstein Barr virus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.99
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 accggct 8
         |||||||
Sbjct: 2 accggct 8



>VMR_0892 | rcmv-miR-r111.1-1 | Rat cytomegalovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 caccgg 6
         ||||||
Sbjct: 3 caccgg 8



>VMR_0891 | rcmv-miR-r111.1-1 | Rat cytomegalovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 caccgg 6
         ||||||
Sbjct: 3 caccgg 8



>VMR_0889 | rcmv-miR-r111.1-1 | Rat cytomegalovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 caccgg 6
         ||||||
Sbjct: 3 caccgg 8



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