BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-22-5p
(7 letters)
Database: /home/users/abid/BLAST/VIRMIRNA
1308 sequences; 10,464 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
VMR_0997 | rlcv-miR-rl1-22-5p | Rhesus lymphocryptovirus 14 0.74
VMR_0996 | rlcv-miR-rl1-22-5p | Rhesus lymphocryptovirus 14 0.74
VMR_0995 | rlcv-miR-rl1-22-5p | Rhesus lymphocryptovirus 14 0.74
VMR_0994 | rlcv-miR-rl1-22-5p | Rhesus lymphocryptovirus 14 0.74
VMR_0818 | prv-miR-8-5p | Pseudorabies virus 12 2.9
VMR_0816 | prv-miR-8-5p | Pseudorabies virus 12 2.9
VMR_0812 | prv-miR-8-5p | Pseudorabies virus 12 2.9
VMR_0809 | prv-miR-8-5p | Pseudorabies virus 12 2.9
VMR_0808 | prv-miR-8-5p | Pseudorabies virus 12 2.9
VMR_0803 | prv-miR-8-5p | Pseudorabies virus 12 2.9
VMR_0799 | prv-miR-8-5p | Pseudorabies virus 12 2.9
VMR_0797 | prv-miR-8-5p | Pseudorabies virus 12 2.9
VMR_0620 | prv-miR-11-1 | Pseudorabies virus 12 2.9
VMR_0611 | prv-miR-11-1 | Pseudorabies virus 12 2.9
VMR_0239 | hcmv-miR-us29-3p6 | Human cytomegalovirus 12 2.9
VMR_0066 | dev-miR-d13-5p | Duck enteritis virus 12 2.9
>VMR_0997 | rlcv-miR-rl1-22-5p | Rhesus lymphocryptovirus
Length = 8
Score = 14.4 bits (7), Expect = 0.74
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgtgggg 7
|||||||
Sbjct: 1 cgtgggg 7
>VMR_0996 | rlcv-miR-rl1-22-5p | Rhesus lymphocryptovirus
Length = 8
Score = 14.4 bits (7), Expect = 0.74
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgtgggg 7
|||||||
Sbjct: 2 cgtgggg 8
>VMR_0995 | rlcv-miR-rl1-22-5p | Rhesus lymphocryptovirus
Length = 8
Score = 14.4 bits (7), Expect = 0.74
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgtgggg 7
|||||||
Sbjct: 1 cgtgggg 7
>VMR_0994 | rlcv-miR-rl1-22-5p | Rhesus lymphocryptovirus
Length = 8
Score = 14.4 bits (7), Expect = 0.74
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgtgggg 7
|||||||
Sbjct: 2 cgtgggg 8
>VMR_0818 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 1 gtgggg 6
>VMR_0816 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 1 gtgggg 6
>VMR_0812 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 1 gtgggg 6
>VMR_0809 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 1 gtgggg 6
>VMR_0808 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 3 gtgggg 8
>VMR_0803 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 1 gtgggg 6
>VMR_0799 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 1 gtgggg 6
>VMR_0797 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 1 gtgggg 6
>VMR_0620 | prv-miR-11-1 | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 1 gtgggg 6
>VMR_0611 | prv-miR-11-1 | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgggg 7
||||||
Sbjct: 1 gtgggg 6
>VMR_0239 | hcmv-miR-us29-3p6 | Human cytomegalovirus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cgtggg 6
||||||
Sbjct: 6 cgtggg 1
>VMR_0066 | dev-miR-d13-5p | Duck enteritis virus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cgtggg 6
||||||
Sbjct: 3 cgtggg 8
Database: /home/users/abid/BLAST/VIRMIRNA
Posted date: Sep 8, 2014 7:41 PM
Number of letters in database: 10,464
Number of sequences in database: 1308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 20
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 100.0: 16
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 16
Length of query: 7
Length of database: 10,464
Length adjustment: 4
Effective length of query: 3
Effective length of database: 5232
Effective search space: 15696
Effective search space used: 15696
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)
