BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR164
(8 letters)
Database: /home/users/abid/BLAST/VIRMIRNA
1308 sequences; 10,464 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
VMR_1281 | wssv-miR164 | White Spot Syndrome virus 16 0.25
VMR_1201 | tumv-miR-s22 | Turnip mosaic virus 14 0.99
VMR_1165 | sgiv-miR-10 | Singapore grouper iridovirus 12 3.9
VMR_0527 | mghv-miR-m1-1* | Mouse gammaherpesvirus 68 12 3.9
VMR_0512 | mdv2-miR-m25-5p | Mareks disease virus type 2 12 3.9
VMR_0494 | mdv2-miR-m17* | Mareks disease virus type 2 12 3.9
VMR_0486 | mdv2-miR-m14-3p | Mareks disease virus type 2 12 3.9
VMR_0456 | mdv1-miR-m11-5p | Mareks disease virus type 1 12 3.9
VMR_0351 | hvt-miR-h10 | Herpesvirus of turkeys 12 3.9
VMR_0053 | blv-miR-b5-5p | Bovine leukemia virus 12 3.9
>VMR_1281 | wssv-miR164 | White Spot Syndrome virus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cttccttc 8
||||||||
Sbjct: 1 cttccttc 8
>VMR_1201 | tumv-miR-s22 | Turnip mosaic virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cttcctt 7
|||||||
Sbjct: 2 cttcctt 8
>VMR_1165 | sgiv-miR-10 | Singapore grouper iridovirus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 3 tccttc 8
||||||
Sbjct: 6 tccttc 1
>VMR_0527 | mghv-miR-m1-1* | Mouse gammaherpesvirus 68
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 6 cttcct 1
>VMR_0512 | mdv2-miR-m25-5p | Mareks disease virus type 2
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 3 tccttc 8
||||||
Sbjct: 3 tccttc 8
>VMR_0494 | mdv2-miR-m17* | Mareks disease virus type 2
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 3 tccttc 8
||||||
Sbjct: 3 tccttc 8
>VMR_0486 | mdv2-miR-m14-3p | Mareks disease virus type 2
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 8 cttcct 3
>VMR_0456 | mdv1-miR-m11-5p | Mareks disease virus type 1
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcctt 7
||||||
Sbjct: 3 ttcctt 8
>VMR_0351 | hvt-miR-h10 | Herpesvirus of turkeys
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 3 tccttc 8
||||||
Sbjct: 1 tccttc 6
>VMR_0053 | blv-miR-b5-5p | Bovine leukemia virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttcct 6
||||||
Sbjct: 6 cttcct 1
Database: /home/users/abid/BLAST/VIRMIRNA
Posted date: Sep 8, 2014 7:41 PM
Number of letters in database: 10,464
Number of sequences in database: 1308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 13
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 100.0: 10
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 10
Length of query: 8
Length of database: 10,464
Length adjustment: 4
Effective length of query: 4
Effective length of database: 5232
Effective search space: 20928
Effective search space used: 20928
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)