BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b7-5p
(8 letters)
Database: /home/users/abid/BLAST/VIRMIRNA
1308 sequences; 10,464 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
VMR_0198 | hbv-miR-b7-5p | Herpes B virus 16 0.25
VMR_0195 | hbv-miR-b7-5p | Herpes B virus 16 0.25
VMR_0193 | hbv-miR-b7-5p | Herpes B virus 16 0.25
VMR_0191 | hbv-miR-b7-5p | Herpes B virus 16 0.25
VMR_0788 | prv-miR-8-3p | Pseudorabies virus 14 0.99
VMR_0197 | hbv-miR-b7-5p | Herpes B virus 14 0.99
VMR_0194 | hbv-miR-b7-5p | Herpes B virus 14 0.99
VMR_0192 | hbv-miR-b7-5p | Herpes B virus 14 0.99
VMR_0190 | hbv-miR-b7-5p | Herpes B virus 14 0.99
VMR_1288 | wssv-miR211 | White Spot Syndrome virus 12 3.9
VMR_0445 | mcmv-miR-m88-1 | Mouse cytomegalovirus 12 3.9
VMR_0200 | hbv-miR-b7-5p | Herpes B virus 12 3.9
VMR_0199 | hbv-miR-b7-5p | Herpes B virus 12 3.9
VMR_0196 | hbv-miR-b7-5p | Herpes B virus 12 3.9
>VMR_0198 | hbv-miR-b7-5p | Herpes B virus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cttctggg 8
||||||||
Sbjct: 1 cttctggg 8
>VMR_0195 | hbv-miR-b7-5p | Herpes B virus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cttctggg 8
||||||||
Sbjct: 1 cttctggg 8
>VMR_0193 | hbv-miR-b7-5p | Herpes B virus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cttctggg 8
||||||||
Sbjct: 1 cttctggg 8
>VMR_0191 | hbv-miR-b7-5p | Herpes B virus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cttctggg 8
||||||||
Sbjct: 1 cttctggg 8
>VMR_0788 | prv-miR-8-3p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cttctgg 7
|||||||
Sbjct: 2 cttctgg 8
>VMR_0197 | hbv-miR-b7-5p | Herpes B virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttctggg 8
|||||||
Sbjct: 1 ttctggg 7
>VMR_0194 | hbv-miR-b7-5p | Herpes B virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttctggg 8
|||||||
Sbjct: 1 ttctggg 7
>VMR_0192 | hbv-miR-b7-5p | Herpes B virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttctggg 8
|||||||
Sbjct: 1 ttctggg 7
>VMR_0190 | hbv-miR-b7-5p | Herpes B virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttctggg 8
|||||||
Sbjct: 1 ttctggg 7
>VMR_1288 | wssv-miR211 | White Spot Syndrome virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttctgg 7
||||||
Sbjct: 6 ttctgg 1
>VMR_0445 | mcmv-miR-m88-1 | Mouse cytomegalovirus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cttctg 6
||||||
Sbjct: 6 cttctg 1
>VMR_0200 | hbv-miR-b7-5p | Herpes B virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 3 tctggg 8
||||||
Sbjct: 1 tctggg 6
>VMR_0199 | hbv-miR-b7-5p | Herpes B virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 3 tctggg 8
||||||
Sbjct: 1 tctggg 6
>VMR_0196 | hbv-miR-b7-5p | Herpes B virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 3 tctggg 8
||||||
Sbjct: 1 tctggg 6
Database: /home/users/abid/BLAST/VIRMIRNA
Posted date: Sep 8, 2014 7:41 PM
Number of letters in database: 10,464
Number of sequences in database: 1308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 27
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 100.0: 14
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 14
Length of query: 8
Length of database: 10,464
Length adjustment: 4
Effective length of query: 4
Effective length of database: 5232
Effective search space: 20928
Effective search space used: 20928
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)
