BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tumv-miR-s7
         (7 letters)

Database: /home/users/abid/BLAST/VIRMIRNA 
           1308 sequences; 10,464 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VMR_1253 | tumv-miR-s7 | Turnip mosaic virus                           14   0.74 
VMR_0403 | kshv-miR-k12-3 | Kaposi sarcoma-associated herpesvirus      14   0.74 
VMR_0571 | ohv2-miR-17-27 | Ovine herpesvirus 2                        12   2.9  
VMR_0553 | mghv-miR-m1-9 | Mouse gammaherpesvirus 68                   12   2.9  
VMR_0419 | kshv-miR-k3_+1_5 | Kaposi sarcoma-associated herpesvirus    12   2.9  
VMR_0115 | ebv-miR-bart19-5p | Epstein Barr virus                      12   2.9  
>VMR_1253 | tumv-miR-s7 | Turnip mosaic virus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.74
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gaatgtg 7
         |||||||
Sbjct: 2 gaatgtg 8
>VMR_0403 | kshv-miR-k12-3 | Kaposi sarcoma-associated
         herpesvirus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.74
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gaatgtg 7
         |||||||
Sbjct: 8 gaatgtg 2
>VMR_0571 | ohv2-miR-17-27 | Ovine herpesvirus 2
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 aatgtg 7
         ||||||
Sbjct: 8 aatgtg 3
>VMR_0553 | mghv-miR-m1-9 | Mouse gammaherpesvirus 68
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 aatgtg 7
         ||||||
Sbjct: 7 aatgtg 2
>VMR_0419 | kshv-miR-k3_+1_5 | Kaposi sarcoma-associated
         herpesvirus
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 aatgtg 7
         ||||||
Sbjct: 8 aatgtg 3
>VMR_0115 | ebv-miR-bart19-5p | Epstein Barr virus
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gaatgt 6
         ||||||
Sbjct: 6 gaatgt 1
  Database: /home/users/abid/BLAST/VIRMIRNA
    Posted date:  Sep 8, 2014  7:41 PM
  Number of letters in database: 10,464
  Number of sequences in database:  1308
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 8
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 100.0: 6
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 6
Length of query: 7
Length of database: 10,464
Length adjustment: 4
Effective length of query: 3
Effective length of database: 5232
Effective search space:    15696
Effective search space used:    15696
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)