BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rrv-miR-rr1-15-5p
         (8 letters)

Database: /home/users/abid/BLAST/VIRMIRNA 
           1308 sequences; 10,464 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VMR_1101 | rrv-miR-rr1-15-5p | Rhesus rhadinovirus                     16   0.25 
VMR_0432 | mcmv-miR-m108-2-5p.1 | Mouse cytomegalovirus                16   0.25 
VMR_1100 | rrv-miR-rr1-15-5p | Rhesus rhadinovirus                     14   0.99 
VMR_1099 | rrv-miR-rr1-15-5p | Rhesus rhadinovirus                     14   0.99 
VMR_1098 | rrv-miR-rr1-15-5p | Rhesus rhadinovirus                     14   0.99 
VMR_1097 | rrv-miR-rr1-15-5p | Rhesus rhadinovirus                     14   0.99 
VMR_1157 | rrv-miR-rr1-9-3p | Rhesus rhadinovirus                      14   0.99 
VMR_1156 | rrv-miR-rr1-9-3p | Rhesus rhadinovirus                      14   0.99 
VMR_1154 | rrv-miR-rr1-9-3p | Rhesus rhadinovirus                      14   0.99 
VMR_1153 | rrv-miR-rr1-9-3p | Rhesus rhadinovirus                      14   0.99 
VMR_1152 | rrv-miR-rr1-9-3p | Rhesus rhadinovirus                      14   0.99 
VMR_0429 | mcmv-miR-m107-1-5p | Mouse cytomegalovirus                  14   0.99 
VMR_1155 | rrv-miR-rr1-9-3p | Rhesus rhadinovirus                      12   3.9  
VMR_0948 | rhcmv-miR-rh183-2 | Rhesus Cytomegalovirus                  12   3.9  
VMR_0482 | mdv1-miR-m8-3p | Mareks disease virus type 1                12   3.9  
VMR_0398 | kshv-miR-k12-11* | Kaposi sarcoma-associated herpesvirus    12   3.9  
VMR_0405 | kshv-miR-k12-3-3p | Kaposi sarcoma-associated herpesv...    12   3.9  
VMR_0404 | kshv-miR-k12-3* | Kaposi sarcoma-associated herpesvirus     12   3.9  
VMR_0072 | dev-miR-d17-3p | Duck enteritis virus                       12   3.9  
>VMR_1101 | rrv-miR-rr1-15-5p | Rhesus rhadinovirus
          Length = 8

 Score = 16.4 bits (8), Expect = 0.25
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 gcggtcac 8
         ||||||||
Sbjct: 1 gcggtcac 8
>VMR_0432 | mcmv-miR-m108-2-5p.1 | Mouse cytomegalovirus
          Length = 8

 Score = 16.4 bits (8), Expect = 0.25
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 gcggtcac 8
         ||||||||
Sbjct: 1 gcggtcac 8
>VMR_1100 | rrv-miR-rr1-15-5p | Rhesus rhadinovirus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.99
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gcggtca 7
         |||||||
Sbjct: 2 gcggtca 8
>VMR_1099 | rrv-miR-rr1-15-5p | Rhesus rhadinovirus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.99
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gcggtca 7
         |||||||
Sbjct: 2 gcggtca 8
>VMR_1098 | rrv-miR-rr1-15-5p | Rhesus rhadinovirus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.99
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gcggtca 7
         |||||||
Sbjct: 2 gcggtca 8
>VMR_1097 | rrv-miR-rr1-15-5p | Rhesus rhadinovirus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.99
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gcggtca 7
         |||||||
Sbjct: 2 gcggtca 8
>VMR_1157 | rrv-miR-rr1-9-3p | Rhesus rhadinovirus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.99
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gcggtca 7
         |||||||
Sbjct: 2 gcggtca 8
>VMR_1156 | rrv-miR-rr1-9-3p | Rhesus rhadinovirus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.99
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gcggtca 7
         |||||||
Sbjct: 1 gcggtca 7
>VMR_1154 | rrv-miR-rr1-9-3p | Rhesus rhadinovirus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.99
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gcggtca 7
         |||||||
Sbjct: 1 gcggtca 7
>VMR_1153 | rrv-miR-rr1-9-3p | Rhesus rhadinovirus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.99
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gcggtca 7
         |||||||
Sbjct: 1 gcggtca 7
>VMR_1152 | rrv-miR-rr1-9-3p | Rhesus rhadinovirus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.99
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gcggtca 7
         |||||||
Sbjct: 1 gcggtca 7
>VMR_0429 | mcmv-miR-m107-1-5p | Mouse cytomegalovirus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.99
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 cggtcac 8
         |||||||
Sbjct: 1 cggtcac 7
>VMR_1155 | rrv-miR-rr1-9-3p | Rhesus rhadinovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cggtca 7
         ||||||
Sbjct: 1 cggtca 6
>VMR_0948 | rhcmv-miR-rh183-2 | Rhesus Cytomegalovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cggtca 7
         ||||||
Sbjct: 3 cggtca 8
>VMR_0482 | mdv1-miR-m8-3p | Mareks disease virus type 1
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 3 ggtcac 8
         ||||||
Sbjct: 6 ggtcac 1
>VMR_0398 | kshv-miR-k12-11* | Kaposi sarcoma-associated
         herpesvirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 3 ggtcac 8
         ||||||
Sbjct: 1 ggtcac 6
>VMR_0405 | kshv-miR-k12-3-3p | Kaposi sarcoma-associated
         herpesvirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gcggtc 6
         ||||||
Sbjct: 3 gcggtc 8
>VMR_0404 | kshv-miR-k12-3* | Kaposi sarcoma-associated
         herpesvirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gcggtc 6
         ||||||
Sbjct: 3 gcggtc 8
>VMR_0072 | dev-miR-d17-3p | Duck enteritis virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gcggtc 6
         ||||||
Sbjct: 6 gcggtc 1
  Database: /home/users/abid/BLAST/VIRMIRNA
    Posted date:  Sep 8, 2014  7:41 PM
  Number of letters in database: 10,464
  Number of sequences in database:  1308
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 35
Number of extensions: 21
Number of successful extensions: 19
Number of sequences better than 100.0: 19
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 19
Length of query: 8
Length of database: 10,464
Length adjustment: 4
Effective length of query: 4
Effective length of database: 5232
Effective search space:    20928
Effective search space used:    20928
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)