BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-8-5p
(7 letters)
Database: /home/users/abid/BLAST/VIRMIRNA
1308 sequences; 10,464 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
VMR_0820 | prv-miR-8-5p | Pseudorabies virus 14 0.74
VMR_0819 | prv-miR-8-5p | Pseudorabies virus 14 0.74
VMR_0817 | prv-miR-8-5p | Pseudorabies virus 14 0.74
VMR_0813 | prv-miR-8-5p | Pseudorabies virus 14 0.74
VMR_0810 | prv-miR-8-5p | Pseudorabies virus 14 0.74
VMR_0804 | prv-miR-8-5p | Pseudorabies virus 14 0.74
VMR_0795 | prv-miR-8-5p | Pseudorabies virus 14 0.74
VMR_0897 | rcmv-miR-r111.1-3 | Rat cytomegalovirus 12 2.9
VMR_0896 | rcmv-miR-r111.1-3 | Rat cytomegalovirus 12 2.9
VMR_0821 | prv-miR-8-5p | Pseudorabies virus 12 2.9
VMR_0818 | prv-miR-8-5p | Pseudorabies virus 12 2.9
VMR_0816 | prv-miR-8-5p | Pseudorabies virus 12 2.9
VMR_0812 | prv-miR-8-5p | Pseudorabies virus 12 2.9
VMR_0809 | prv-miR-8-5p | Pseudorabies virus 12 2.9
VMR_0803 | prv-miR-8-5p | Pseudorabies virus 12 2.9
VMR_0800 | prv-miR-8-5p | Pseudorabies virus 12 2.9
VMR_0799 | prv-miR-8-5p | Pseudorabies virus 12 2.9
VMR_0797 | prv-miR-8-5p | Pseudorabies virus 12 2.9
VMR_0438 | mcmv-miR-m23-2 | Mouse cytomegalovirus 12 2.9
VMR_0336 | hsv2-miR-h5 | Herpes simplex virus 2 12 2.9
VMR_0318 | hsv1-miR-h8* | Herpes simplex virus 1 12 2.9
VMR_0189 | hbv-miR-b4 | Herpes B virus 12 2.9
>VMR_0820 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.74
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggggcg 7
|||||||
Sbjct: 1 gggggcg 7
>VMR_0819 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.74
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggggcg 7
|||||||
Sbjct: 2 gggggcg 8
>VMR_0817 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.74
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggggcg 7
|||||||
Sbjct: 2 gggggcg 8
>VMR_0813 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.74
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggggcg 7
|||||||
Sbjct: 2 gggggcg 8
>VMR_0810 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.74
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggggcg 7
|||||||
Sbjct: 2 gggggcg 8
>VMR_0804 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.74
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggggcg 7
|||||||
Sbjct: 2 gggggcg 8
>VMR_0795 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.74
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gggggcg 7
|||||||
Sbjct: 2 gggggcg 8
>VMR_0897 | rcmv-miR-r111.1-3 | Rat cytomegalovirus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggggc 6
||||||
Sbjct: 3 gggggc 8
>VMR_0896 | rcmv-miR-r111.1-3 | Rat cytomegalovirus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggggc 6
||||||
Sbjct: 3 gggggc 8
>VMR_0821 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggcg 7
||||||
Sbjct: 1 ggggcg 6
>VMR_0818 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggggc 6
||||||
Sbjct: 3 gggggc 8
>VMR_0816 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggggc 6
||||||
Sbjct: 3 gggggc 8
>VMR_0812 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggggc 6
||||||
Sbjct: 3 gggggc 8
>VMR_0809 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggggc 6
||||||
Sbjct: 3 gggggc 8
>VMR_0803 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggggc 6
||||||
Sbjct: 3 gggggc 8
>VMR_0800 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggcg 7
||||||
Sbjct: 1 ggggcg 6
>VMR_0799 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggggc 6
||||||
Sbjct: 3 gggggc 8
>VMR_0797 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggggc 6
||||||
Sbjct: 3 gggggc 8
>VMR_0438 | mcmv-miR-m23-2 | Mouse cytomegalovirus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggggc 6
||||||
Sbjct: 3 gggggc 8
>VMR_0336 | hsv2-miR-h5 | Herpes simplex virus 2
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gggggc 6
||||||
Sbjct: 3 gggggc 8
>VMR_0318 | hsv1-miR-h8* | Herpes simplex virus 1
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gggggc 6
||||||
Sbjct: 6 gggggc 1
>VMR_0189 | hbv-miR-b4 | Herpes B virus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggcg 7
||||||
Sbjct: 3 ggggcg 8
Database: /home/users/abid/BLAST/VIRMIRNA
Posted date: Sep 8, 2014 7:41 PM
Number of letters in database: 10,464
Number of sequences in database: 1308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 29
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 100.0: 22
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 22
Length of query: 7
Length of database: 10,464
Length adjustment: 4
Effective length of query: 3
Effective length of database: 5232
Effective search space: 15696
Effective search space used: 15696
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)
