BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hsv1-miR-h5-5p
         (7 letters)

Database: /home/users/abid/BLAST/VIRMIRNA 
           1308 sequences; 10,464 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VMR_0780 | prv-miR-7-5p | Pseudorabies virus                           14   0.74 
VMR_0776 | prv-miR-7-5p | Pseudorabies virus                           14   0.74 
VMR_0772 | prv-miR-7-5p | Pseudorabies virus                           14   0.74 
VMR_0768 | prv-miR-7-5p | Pseudorabies virus                           14   0.74 
VMR_0465 | mdv1-miR-m3* | Mareks disease virus type 1                  14   0.74 
VMR_0311 | hsv1-miR-h5-5p | Herpes simplex virus 1                     14   0.74 
VMR_0036 | bhv5-miR-b14 | Bovine herpesvirus 5                         14   0.74 
VMR_0779 | prv-miR-7-5p | Pseudorabies virus                           12   2.9  
VMR_0774 | prv-miR-7-5p | Pseudorabies virus                           12   2.9  
VMR_0771 | prv-miR-7-5p | Pseudorabies virus                           12   2.9  
VMR_0767 | prv-miR-7-5p | Pseudorabies virus                           12   2.9  
VMR_0766 | prv-miR-7-5p | Pseudorabies virus                           12   2.9  
VMR_0764 | prv-miR-7-5p | Pseudorabies virus                           12   2.9  
VMR_0336 | hsv2-miR-h5 | Herpes simplex virus 2                        12   2.9  
VMR_0033 | bhv5-miR-B11 | Bovine herpesvirus 5                         12   2.9  
>VMR_0780 | prv-miR-7-5p | Pseudorabies virus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.74
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggggggt 7
         |||||||
Sbjct: 2 ggggggt 8
>VMR_0776 | prv-miR-7-5p | Pseudorabies virus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.74
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggggggt 7
         |||||||
Sbjct: 2 ggggggt 8
>VMR_0772 | prv-miR-7-5p | Pseudorabies virus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.74
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggggggt 7
         |||||||
Sbjct: 2 ggggggt 8
>VMR_0768 | prv-miR-7-5p | Pseudorabies virus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.74
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggggggt 7
         |||||||
Sbjct: 2 ggggggt 8
>VMR_0465 | mdv1-miR-m3* | Mareks disease virus type 1
          Length = 8

 Score = 14.4 bits (7), Expect = 0.74
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggggggt 7
         |||||||
Sbjct: 2 ggggggt 8
>VMR_0311 | hsv1-miR-h5-5p | Herpes simplex virus 1
          Length = 8

 Score = 14.4 bits (7), Expect = 0.74
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggggggt 7
         |||||||
Sbjct: 2 ggggggt 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gggggg 6
         ||||||
Sbjct: 1 gggggg 6
>VMR_0036 | bhv5-miR-b14 | Bovine herpesvirus 5
          Length = 8

 Score = 14.4 bits (7), Expect = 0.74
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggggggt 7
         |||||||
Sbjct: 2 ggggggt 8
>VMR_0779 | prv-miR-7-5p | Pseudorabies virus
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gggggg 6
         ||||||
Sbjct: 3 gggggg 8
>VMR_0774 | prv-miR-7-5p | Pseudorabies virus
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gggggg 6
         ||||||
Sbjct: 3 gggggg 8
>VMR_0771 | prv-miR-7-5p | Pseudorabies virus
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gggggg 6
         ||||||
Sbjct: 3 gggggg 8
>VMR_0767 | prv-miR-7-5p | Pseudorabies virus
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gggggg 6
         ||||||
Sbjct: 3 gggggg 8
>VMR_0766 | prv-miR-7-5p | Pseudorabies virus
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggggt 7
         ||||||
Sbjct: 3 gggggt 8
>VMR_0764 | prv-miR-7-5p | Pseudorabies virus
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gggggg 6
         ||||||
Sbjct: 3 gggggg 8
>VMR_0336 | hsv2-miR-h5 | Herpes simplex virus 2
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gggggg 6
         ||||||
Sbjct: 1 gggggg 6
>VMR_0033 | bhv5-miR-B11 | Bovine herpesvirus 5
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gggggt 7
         ||||||
Sbjct: 3 gggggt 8
  Database: /home/users/abid/BLAST/VIRMIRNA
    Posted date:  Sep 8, 2014  7:41 PM
  Number of letters in database: 10,464
  Number of sequences in database:  1308
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 24
Number of extensions: 17
Number of successful extensions: 16
Number of sequences better than 100.0: 15
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 16
Length of query: 7
Length of database: 10,464
Length adjustment: 4
Effective length of query: 3
Effective length of database: 5232
Effective search space:    15696
Effective search space used:    15696
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)