BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= kun-miR-1
         (7 letters)

Database: /home/users/abid/BLAST/VIRMIRNA 
           1308 sequences; 10,464 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VMR_0420 | kun-miR-1 | West Nile Virus                                 14   0.74 
VMR_1024 | rlcv-miR-rl1-3 | Rhesus lymphocryptovirus                   14   0.74 
VMR_1103 | rrv-miR-rr1-1-5p | Rhesus rhadinovirus                      12   2.9  
VMR_1055 | rlcv-miR-rl1-5-3p | Rhesus lymphocryptovirus                12   2.9  
VMR_0969 | rlcv-miR-rl1-14-3p | Rhesus lymphocryptovirus               12   2.9  
VMR_0892 | rcmv-miR-r111.1-1 | Rat cytomegalovirus                     12   2.9  
VMR_0891 | rcmv-miR-r111.1-1 | Rat cytomegalovirus                     12   2.9  
VMR_0889 | rcmv-miR-r111.1-1 | Rat cytomegalovirus                     12   2.9  
VMR_0302 | hsv1-miR-h2* | Herpes simplex virus 1                       12   2.9  
VMR_0296 | hsv1-miR-h14-5p | Herpes simplex virus 1                    12   2.9  
VMR_0126 | ebv-miR-bart3-3p | Epstein Barr virus                       12   2.9  
VMR_0124 | ebv-miR-bart3 | Epstein Barr virus                          12   2.9  
>VMR_0420 | kun-miR-1 | West Nile Virus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.74
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggtgcga 7
         |||||||
Sbjct: 2 ggtgcga 8
>VMR_1024 | rlcv-miR-rl1-3 | Rhesus lymphocryptovirus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.74
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ggtgcga 7
         |||||||
Sbjct: 7 ggtgcga 1
>VMR_1103 | rrv-miR-rr1-1-5p | Rhesus rhadinovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtgcga 7
         ||||||
Sbjct: 8 gtgcga 3
>VMR_1055 | rlcv-miR-rl1-5-3p | Rhesus lymphocryptovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtgcg 6
         ||||||
Sbjct: 6 ggtgcg 1
>VMR_0969 | rlcv-miR-rl1-14-3p | Rhesus lymphocryptovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtgcga 7
         ||||||
Sbjct: 6 gtgcga 1
>VMR_0892 | rcmv-miR-r111.1-1 | Rat cytomegalovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtgcg 6
         ||||||
Sbjct: 6 ggtgcg 1
>VMR_0891 | rcmv-miR-r111.1-1 | Rat cytomegalovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtgcg 6
         ||||||
Sbjct: 6 ggtgcg 1
>VMR_0889 | rcmv-miR-r111.1-1 | Rat cytomegalovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtgcg 6
         ||||||
Sbjct: 6 ggtgcg 1
>VMR_0302 | hsv1-miR-h2* | Herpes simplex virus 1
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtgcga 7
         ||||||
Sbjct: 6 gtgcga 1
>VMR_0296 | hsv1-miR-h14-5p | Herpes simplex virus 1
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtgcga 7
         ||||||
Sbjct: 8 gtgcga 3
>VMR_0126 | ebv-miR-bart3-3p | Epstein Barr virus
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtgcg 6
         ||||||
Sbjct: 6 ggtgcg 1
>VMR_0124 | ebv-miR-bart3 | Epstein Barr virus
          Length = 8

 Score = 12.4 bits (6), Expect = 2.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggtgcg 6
         ||||||
Sbjct: 6 ggtgcg 1
  Database: /home/users/abid/BLAST/VIRMIRNA
    Posted date:  Sep 8, 2014  7:41 PM
  Number of letters in database: 10,464
  Number of sequences in database:  1308
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 16
Number of extensions: 14
Number of successful extensions: 12
Number of sequences better than 100.0: 12
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 12
Length of query: 7
Length of database: 10,464
Length adjustment: 4
Effective length of query: 3
Effective length of database: 5232
Effective search space:    15696
Effective search space used:    15696
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)