VIRmiRNA

BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tumv-miR-s59
         (8 letters)

Database: /home/users/abid/BLAST/VIRMIRNA 
           1308 sequences; 10,464 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VMR_1241 | tumv-miR-s59 | Turnip mosaic virus                          16   0.25 
VMR_1268 | tumv-miR-s9 | Turnip mosaic virus                           12   3.9  
VMR_1249 | tumv-miR-s66 | Turnip mosaic virus                          12   3.9  
VMR_1055 | rlcv-miR-rl1-5-3p | Rhesus lymphocryptovirus                12   3.9  
VMR_1053 | rlcv-miR-rl1-4-3p | Rhesus lymphocryptovirus                12   3.9  
VMR_0986 | rlcv-miR-rl1-19-3p | Rhesus lymphocryptovirus               12   3.9  
VMR_0985 | rlcv-miR-rl1-19-3p | Rhesus lymphocryptovirus               12   3.9  
VMR_0758 | prv-miR-7-3p | Pseudorabies virus                           12   3.9  
VMR_0757 | prv-miR-7-3p | Pseudorabies virus                           12   3.9  
VMR_0756 | prv-miR-7-3p | Pseudorabies virus                           12   3.9  
VMR_0754 | prv-miR-7-3p | Pseudorabies virus                           12   3.9  
VMR_0548 | mghv-miR-m1-6* | Mouse gammaherpesvirus 68                  12   3.9  
VMR_0126 | ebv-miR-bart3-3p | Epstein Barr virus                       12   3.9  
VMR_0124 | ebv-miR-bart3 | Epstein Barr virus                          12   3.9  

>VMR_1241 | tumv-miR-s59 | Turnip mosaic virus
          Length = 8

 Score = 16.4 bits (8), Expect = 0.25
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ggtggtgg 8
         ||||||||
Sbjct: 1 ggtggtgg 8



>VMR_1268 | tumv-miR-s9 | Turnip mosaic virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 3 tggtgg 8
         ||||||
Sbjct: 3 tggtgg 8



>VMR_1249 | tumv-miR-s66 | Turnip mosaic virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 3 tggtgg 8
         ||||||
Sbjct: 3 tggtgg 8



>VMR_1055 | rlcv-miR-rl1-5-3p | Rhesus lymphocryptovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtggtg 7
         ||||||
Sbjct: 8 gtggtg 3



>VMR_1053 | rlcv-miR-rl1-4-3p | Rhesus lymphocryptovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtggtg 7
         ||||||
Sbjct: 6 gtggtg 1



>VMR_0986 | rlcv-miR-rl1-19-3p | Rhesus lymphocryptovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gtggtg 7
         ||||||
Sbjct: 8 gtggtg 3



>VMR_0985 | rlcv-miR-rl1-19-3p | Rhesus lymphocryptovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Stra