BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-35-3p
(7 letters)
Database: /home/users/abid/BLAST/VIRMIRNA
1308 sequences; 10,464 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
VMR_1049 | rlcv-miR-rl1-35-3p | Rhesus lymphocryptovirus 14 0.74
VMR_1048 | rlcv-miR-rl1-35-3p | Rhesus lymphocryptovirus 14 0.74
VMR_1047 | rlcv-miR-rl1-35-3p | Rhesus lymphocryptovirus 14 0.74
VMR_1046 | rlcv-miR-rl1-35-3p | Rhesus lymphocryptovirus 14 0.74
VMR_1045 | rlcv-miR-rl1-35-3p | Rhesus lymphocryptovirus 14 0.74
VMR_1044 | rlcv-miR-rl1-35-3p | Rhesus lymphocryptovirus 14 0.74
VMR_1043 | rlcv-miR-rl1-35-3p | Rhesus lymphocryptovirus 14 0.74
VMR_1042 | rlcv-miR-rl1-35-3p | Rhesus lymphocryptovirus 14 0.74
VMR_0102 | ebv-miR-bart13 | Epstein Barr virus 14 0.74
VMR_1032 | rlcv-miR-rl1-32-5p | Rhesus lymphocryptovirus 12 2.9
VMR_0583 | ohv2-miR-5 | Ovine herpesvirus 2 12 2.9
VMR_0455 | mdv1-miR-m11-3p | Mareks disease virus type 1 12 2.9
>VMR_1049 | rlcv-miR-rl1-35-3p | Rhesus lymphocryptovirus
Length = 8
Score = 14.4 bits (7), Expect = 0.74
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtaactt 7
|||||||
Sbjct: 2 gtaactt 8
>VMR_1048 | rlcv-miR-rl1-35-3p | Rhesus lymphocryptovirus
Length = 8
Score = 14.4 bits (7), Expect = 0.74
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtaactt 7
|||||||
Sbjct: 1 gtaactt 7
>VMR_1047 | rlcv-miR-rl1-35-3p | Rhesus lymphocryptovirus
Length = 8
Score = 14.4 bits (7), Expect = 0.74
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtaactt 7
|||||||
Sbjct: 2 gtaactt 8
>VMR_1046 | rlcv-miR-rl1-35-3p | Rhesus lymphocryptovirus
Length = 8
Score = 14.4 bits (7), Expect = 0.74
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtaactt 7
|||||||
Sbjct: 2 gtaactt 8
>VMR_1045 | rlcv-miR-rl1-35-3p | Rhesus lymphocryptovirus
Length = 8
Score = 14.4 bits (7), Expect = 0.74
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtaactt 7
|||||||
Sbjct: 1 gtaactt 7
>VMR_1044 | rlcv-miR-rl1-35-3p | Rhesus lymphocryptovirus
Length = 8
Score = 14.4 bits (7), Expect = 0.74
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtaactt 7
|||||||
Sbjct: 2 gtaactt 8
>VMR_1043 | rlcv-miR-rl1-35-3p | Rhesus lymphocryptovirus
Length = 8
Score = 14.4 bits (7), Expect = 0.74
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtaactt 7
|||||||
Sbjct: 2 gtaactt 8
>VMR_1042 | rlcv-miR-rl1-35-3p | Rhesus lymphocryptovirus
Length = 8
Score = 14.4 bits (7), Expect = 0.74
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtaactt 7
|||||||
Sbjct: 2 gtaactt 8
>VMR_0102 | ebv-miR-bart13 | Epstein Barr virus
Length = 8
Score = 14.4 bits (7), Expect = 0.74
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtaactt 7
|||||||
Sbjct: 2 gtaactt 8
>VMR_1032 | rlcv-miR-rl1-32-5p | Rhesus lymphocryptovirus
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 taactt 7
||||||
Sbjct: 1 taactt 6
>VMR_0583 | ohv2-miR-5 | Ovine herpesvirus 2
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 taactt 7
||||||
Sbjct: 8 taactt 3
>VMR_0455 | mdv1-miR-m11-3p | Mareks disease virus type 1
Length = 8
Score = 12.4 bits (6), Expect = 2.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtaact 6
||||||
Sbjct: 8 gtaact 3
Database: /home/users/abid/BLAST/VIRMIRNA
Posted date: Sep 8, 2014 7:41 PM
Number of letters in database: 10,464
Number of sequences in database: 1308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 21
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 100.0: 12
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 12
Length of query: 7
Length of database: 10,464
Length adjustment: 4
Effective length of query: 3
Effective length of database: 5232
Effective search space: 15696
Effective search space used: 15696
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)