BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s18
(8 letters)
Database: /home/users/abid/BLAST/VIRMIRNA
1308 sequences; 10,464 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
VMR_1196 | tumv-miR-s18 | Turnip mosaic virus 16 0.25
VMR_1287 | wssv-miR206 | White Spot Syndrome virus 12 3.9
VMR_0874 | prv-miR-9-5p | Pseudorabies virus 12 3.9
VMR_0870 | prv-miR-9-5p | Pseudorabies virus 12 3.9
VMR_0865 | prv-miR-9-5p | Pseudorabies virus 12 3.9
VMR_0861 | prv-miR-9-5p | Pseudorabies virus 12 3.9
VMR_0857 | prv-miR-9-5p | Pseudorabies virus 12 3.9
VMR_0854 | prv-miR-9-5p | Pseudorabies virus 12 3.9
VMR_0851 | prv-miR-9-5p | Pseudorabies virus 12 3.9
VMR_0848 | prv-miR-9-5p | Pseudorabies virus 12 3.9
VMR_0664 | prv-miR-2-3p | Pseudorabies virus 12 3.9
VMR_0543 | mghv-miR-m1-4 | Mouse gammaherpesvirus 68 12 3.9
VMR_0515 | mdv2-miR-m27-3p | Mareks disease virus type 2 12 3.9
VMR_0286 | hsv1-miR-56054b | Herpes simplex virus 1 12 3.9
VMR_0275 | hsv1-miR-114783 | Herpes simplex virus 1 12 3.9
>VMR_1196 | tumv-miR-s18 | Turnip mosaic virus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gtcgaggc 8
||||||||
Sbjct: 1 gtcgaggc 8
>VMR_1287 | wssv-miR206 | White Spot Syndrome virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtcgag 6
||||||
Sbjct: 6 gtcgag 1
>VMR_0874 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgagg 7
||||||
Sbjct: 1 tcgagg 6
>VMR_0870 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgagg 7
||||||
Sbjct: 1 tcgagg 6
>VMR_0865 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgagg 7
||||||
Sbjct: 1 tcgagg 6
>VMR_0861 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgagg 7
||||||
Sbjct: 1 tcgagg 6
>VMR_0857 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgagg 7
||||||
Sbjct: 1 tcgagg 6
>VMR_0854 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgagg 7
||||||
Sbjct: 1 tcgagg 6
>VMR_0851 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgagg 7
||||||
Sbjct: 1 tcgagg 6
>VMR_0848 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgagg 7
||||||
Sbjct: 1 tcgagg 6
>VMR_0664 | prv-miR-2-3p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgagg 7
||||||
Sbjct: 1 tcgagg 6
>VMR_0543 | mghv-miR-m1-4 | Mouse gammaherpesvirus 68
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcgagg 7
||||||
Sbjct: 1 tcgagg 6
>VMR_0515 | mdv2-miR-m27-3p | Mareks disease virus type 2
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtcgag 6
||||||
Sbjct: 3 gtcgag 8
>VMR_0286 | hsv1-miR-56054b | Herpes simplex virus 1
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 3 cgaggc 8
||||||
Sbjct: 7 cgaggc 2
>VMR_0275 | hsv1-miR-114783 | Herpes simplex virus 1
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 3 cgaggc 8
||||||
Sbjct: 1 cgaggc 6
Database: /home/users/abid/BLAST/VIRMIRNA
Posted date: Sep 8, 2014 7:41 PM
Number of letters in database: 10,464
Number of sequences in database: 1308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 25
Number of extensions: 23
Number of successful extensions: 15
Number of sequences better than 100.0: 15
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 15
Length of query: 8
Length of database: 10,464
Length adjustment: 4
Effective length of query: 4
Effective length of database: 5232
Effective search space: 20928
Effective search space used: 20928
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)
