BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rlcv-miR-rl1-18-5p
         (8 letters)

Database: /home/users/abid/BLAST/VIRMIRNA 
           1308 sequences; 10,464 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VMR_0982 | rlcv-miR-rl1-18-5p | Rhesus lymphocryptovirus               16   0.25 
VMR_0981 | rlcv-miR-rl1-18-5p | Rhesus lymphocryptovirus               16   0.25 
VMR_0980 | rlcv-miR-rl1-18-5p | Rhesus lymphocryptovirus               16   0.25 
VMR_1041 | rlcv-miR-rl1-34-5p | Rhesus lymphocryptovirus               12   3.9  
VMR_1040 | rlcv-miR-rl1-34-5p | Rhesus lymphocryptovirus               12   3.9  
VMR_0635 | prv-miR-11-1 | Pseudorabies virus                           12   3.9  
VMR_0626 | prv-miR-11-1 | Pseudorabies virus                           12   3.9  
VMR_0510 | mdv2-miR-m24-3p_-1_5 | Mareks disease virus type 2          12   3.9  
VMR_0087 | dev-miR-d5-5p | Duck enteritis virus                        12   3.9  
>VMR_0982 | rlcv-miR-rl1-18-5p | Rhesus lymphocryptovirus
          Length = 8

 Score = 16.4 bits (8), Expect = 0.25
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tagatgat 8
         ||||||||
Sbjct: 1 tagatgat 8
>VMR_0981 | rlcv-miR-rl1-18-5p | Rhesus lymphocryptovirus
          Length = 8

 Score = 16.4 bits (8), Expect = 0.25
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tagatgat 8
         ||||||||
Sbjct: 1 tagatgat 8
>VMR_0980 | rlcv-miR-rl1-18-5p | Rhesus lymphocryptovirus
          Length = 8

 Score = 16.4 bits (8), Expect = 0.25
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tagatgat 8
         ||||||||
Sbjct: 1 tagatgat 8
>VMR_1041 | rlcv-miR-rl1-34-5p | Rhesus lymphocryptovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tagatg 6
         ||||||
Sbjct: 1 tagatg 6
>VMR_1040 | rlcv-miR-rl1-34-5p | Rhesus lymphocryptovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tagatg 6
         ||||||
Sbjct: 1 tagatg 6
>VMR_0635 | prv-miR-11-1 | Pseudorabies virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 agatga 7
         ||||||
Sbjct: 1 agatga 6
>VMR_0626 | prv-miR-11-1 | Pseudorabies virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 agatga 7
         ||||||
Sbjct: 1 agatga 6
>VMR_0510 | mdv2-miR-m24-3p_-1_5 | Mareks disease virus type 2
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tagatg 6
         ||||||
Sbjct: 1 tagatg 6
>VMR_0087 | dev-miR-d5-5p | Duck enteritis virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 agatga 7
         ||||||
Sbjct: 8 agatga 3
  Database: /home/users/abid/BLAST/VIRMIRNA
    Posted date:  Sep 8, 2014  7:41 PM
  Number of letters in database: 10,464
  Number of sequences in database:  1308
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 16
Number of extensions: 10
Number of successful extensions: 9
Number of sequences better than 100.0: 9
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 10,464
Length adjustment: 4
Effective length of query: 4
Effective length of database: 5232
Effective search space:    20928
Effective search space used:    20928
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)