BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mghv-miR-m1-4
(8 letters)
Database: /home/users/abid/BLAST/VIRMIRNA
1308 sequences; 10,464 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
VMR_0874 | prv-miR-9-5p | Pseudorabies virus 16 0.25
VMR_0870 | prv-miR-9-5p | Pseudorabies virus 16 0.25
VMR_0865 | prv-miR-9-5p | Pseudorabies virus 16 0.25
VMR_0861 | prv-miR-9-5p | Pseudorabies virus 16 0.25
VMR_0857 | prv-miR-9-5p | Pseudorabies virus 16 0.25
VMR_0854 | prv-miR-9-5p | Pseudorabies virus 16 0.25
VMR_0851 | prv-miR-9-5p | Pseudorabies virus 16 0.25
VMR_0848 | prv-miR-9-5p | Pseudorabies virus 16 0.25
VMR_0543 | mghv-miR-m1-4 | Mouse gammaherpesvirus 68 16 0.25
VMR_0875 | prv-miR-9-5p | Pseudorabies virus 14 0.99
VMR_0873 | prv-miR-9-5p | Pseudorabies virus 14 0.99
VMR_0871 | prv-miR-9-5p | Pseudorabies virus 14 0.99
VMR_0869 | prv-miR-9-5p | Pseudorabies virus 14 0.99
VMR_0866 | prv-miR-9-5p | Pseudorabies virus 14 0.99
VMR_0864 | prv-miR-9-5p | Pseudorabies virus 14 0.99
VMR_0862 | prv-miR-9-5p | Pseudorabies virus 14 0.99
VMR_0860 | prv-miR-9-5p | Pseudorabies virus 14 0.99
VMR_0858 | prv-miR-9-5p | Pseudorabies virus 14 0.99
VMR_0856 | prv-miR-9-5p | Pseudorabies virus 14 0.99
VMR_0853 | prv-miR-9-5p | Pseudorabies virus 14 0.99
VMR_0850 | prv-miR-9-5p | Pseudorabies virus 14 0.99
VMR_0847 | prv-miR-9-5p | Pseudorabies virus 14 0.99
VMR_0664 | prv-miR-2-3p | Pseudorabies virus 14 0.99
VMR_0876 | prv-miR-9-5p | Pseudorabies virus 12 3.9
VMR_0872 | prv-miR-9-5p | Pseudorabies virus 12 3.9
VMR_0867 | prv-miR-9-5p | Pseudorabies virus 12 3.9
VMR_0863 | prv-miR-9-5p | Pseudorabies virus 12 3.9
VMR_0859 | prv-miR-9-5p | Pseudorabies virus 12 3.9
VMR_0855 | prv-miR-9-5p | Pseudorabies virus 12 3.9
VMR_0852 | prv-miR-9-5p | Pseudorabies virus 12 3.9
VMR_0849 | prv-miR-9-5p | Pseudorabies virus 12 3.9
VMR_0846 | prv-miR-9-5p | Pseudorabies virus 12 3.9
VMR_0845 | prv-miR-9-5p | Pseudorabies virus 12 3.9
VMR_0425 | mcmv-miR-m01-3* | Mouse cytomegalovirus 12 3.9
>VMR_0874 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcgaggag 8
||||||||
Sbjct: 1 tcgaggag 8
>VMR_0870 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcgaggag 8
||||||||
Sbjct: 1 tcgaggag 8
>VMR_0865 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcgaggag 8
||||||||
Sbjct: 1 tcgaggag 8
>VMR_0861 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcgaggag 8
||||||||
Sbjct: 1 tcgaggag 8
>VMR_0857 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcgaggag 8
||||||||
Sbjct: 1 tcgaggag 8
>VMR_0854 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcgaggag 8
||||||||
Sbjct: 1 tcgaggag 8
>VMR_0851 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcgaggag 8
||||||||
Sbjct: 1 tcgaggag 8
>VMR_0848 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcgaggag 8
||||||||
Sbjct: 1 tcgaggag 8
>VMR_0543 | mghv-miR-m1-4 | Mouse gammaherpesvirus 68
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcgaggag 8
||||||||
Sbjct: 1 tcgaggag 8
>VMR_0875 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgaggag 8
|||||||
Sbjct: 1 cgaggag 7
>VMR_0873 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgagga 7
|||||||
Sbjct: 2 tcgagga 8
>VMR_0871 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgaggag 8
|||||||
Sbjct: 1 cgaggag 7
>VMR_0869 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgagga 7
|||||||
Sbjct: 2 tcgagga 8
>VMR_0866 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgaggag 8
|||||||
Sbjct: 1 cgaggag 7
>VMR_0864 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgagga 7
|||||||
Sbjct: 2 tcgagga 8
>VMR_0862 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgaggag 8
|||||||
Sbjct: 1 cgaggag 7
>VMR_0860 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgagga 7
|||||||
Sbjct: 2 tcgagga 8
>VMR_0858 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgaggag 8
|||||||
Sbjct: 1 cgaggag 7
>VMR_0856 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgagga 7
|||||||
Sbjct: 2 tcgagga 8
>VMR_0853 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgagga 7
|||||||
Sbjct: 2 tcgagga 8
>VMR_0850 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgagga 7
|||||||
Sbjct: 2 tcgagga 8
>VMR_0847 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgagga 7
|||||||
Sbjct: 2 tcgagga 8
>VMR_0664 | prv-miR-2-3p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgagga 7
|||||||
Sbjct: 1 tcgagga 7
>VMR_0876 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 3 gaggag 8
||||||
Sbjct: 1 gaggag 6
>VMR_0872 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 3 gaggag 8
||||||
Sbjct: 1 gaggag 6
>VMR_0867 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 3 gaggag 8
||||||
Sbjct: 1 gaggag 6
>VMR_0863 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 3 gaggag 8
||||||
Sbjct: 1 gaggag 6
>VMR_0859 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 3 gaggag 8
||||||
Sbjct: 1 gaggag 6
>VMR_0855 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 3 gaggag 8
||||||
Sbjct: 1 gaggag 6
>VMR_0852 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 3 gaggag 8
||||||
Sbjct: 1 gaggag 6
>VMR_0849 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 3 gaggag 8
||||||
Sbjct: 1 gaggag 6
>VMR_0846 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 3 gaggag 8
||||||
Sbjct: 1 gaggag 6
>VMR_0845 | prv-miR-9-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 3 gaggag 8
||||||
Sbjct: 1 gaggag 6
>VMR_0425 | mcmv-miR-m01-3* | Mouse cytomegalovirus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagga 7
||||||
Sbjct: 1 cgagga 6
Database: /home/users/abid/BLAST/VIRMIRNA
Posted date: Sep 8, 2014 7:41 PM
Number of letters in database: 10,464
Number of sequences in database: 1308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 68
Number of extensions: 36
Number of successful extensions: 34
Number of sequences better than 100.0: 34
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 34
Length of query: 8
Length of database: 10,464
Length adjustment: 4
Effective length of query: 4
Effective length of database: 5232
Effective search space: 20928
Effective search space used: 20928
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)