BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= iltv-miR-i5
         (8 letters)

Database: /home/users/abid/BLAST/VIRMIRNA 
           1308 sequences; 10,464 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VMR_0383 | iltv-miR-i5 | Infectious laryngotracheitis virus            16   0.25 
VMR_1289 | wssv-miR212 | White Spot Syndrome virus                     14   0.99 
VMR_1213 | tumv-miR-s33 | Turnip mosaic virus                          14   0.99 
VMR_1306 | wssv-miR9 | White Spot Syndrome virus                       12   3.9  
VMR_1290 | wssv-miR214 | White Spot Syndrome virus                     12   3.9  
VMR_1280 | wssv-miR162 | White Spot Syndrome virus                     12   3.9  
VMR_1233 | tumv-miR-s51 | Turnip mosaic virus                          12   3.9  
VMR_0931 | rcmv-miR-r87-1 | Rat cytomegalovirus                        12   3.9  
VMR_0930 | rcmv-miR-r87-1 | Rat cytomegalovirus                        12   3.9  
VMR_0929 | rcmv-miR-r87-1 | Rat cytomegalovirus                        12   3.9  
VMR_0521 | mdv2-miR-m29-5p | Mareks disease virus type 2               12   3.9  
VMR_0450 | mcv-miR-m1-5p | Merkel cell polyomavirus                    12   3.9  
VMR_0217 | hbv-miR-b8-5p | Herpes B virus                              12   3.9  
VMR_0216 | hbv-miR-b8-5p | Herpes B virus                              12   3.9  
VMR_0214 | hbv-miR-b8-5p | Herpes B virus                              12   3.9  
VMR_0212 | hbv-miR-b8-5p | Herpes B virus                              12   3.9  
VMR_0209 | hbv-miR-b8-5p | Herpes B virus                              12   3.9  
VMR_0203 | hbv-miR-b8-5p | Herpes B virus                              12   3.9  
VMR_0201 | hbv-miR-b8-3p | Herpes B virus                              12   3.9  
>VMR_0383 | iltv-miR-i5 | Infectious laryngotracheitis virus
          Length = 8

 Score = 16.4 bits (8), Expect = 0.25
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tgaagaag 8
         ||||||||
Sbjct: 1 tgaagaag 8
>VMR_1289 | wssv-miR212 | White Spot Syndrome virus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.99
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gaagaag 8
         |||||||
Sbjct: 8 gaagaag 2
>VMR_1213 | tumv-miR-s33 | Turnip mosaic virus
          Length = 8

 Score = 14.4 bits (7), Expect = 0.99
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tgaagaa 7
         |||||||
Sbjct: 2 tgaagaa 8
>VMR_1306 | wssv-miR9 | White Spot Syndrome virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 3 aagaag 8
         ||||||
Sbjct: 1 aagaag 6
>VMR_1290 | wssv-miR214 | White Spot Syndrome virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 3 aagaag 8
         ||||||
Sbjct: 1 aagaag 6

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gaagaa 7
         ||||||
Sbjct: 3 gaagaa 8
>VMR_1280 | wssv-miR162 | White Spot Syndrome virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 3 aagaag 8
         ||||||
Sbjct: 1 aagaag 6

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gaagaa 7
         ||||||
Sbjct: 3 gaagaa 8
>VMR_1233 | tumv-miR-s51 | Turnip mosaic virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 3 aagaag 8
         ||||||
Sbjct: 1 aagaag 6
>VMR_0931 | rcmv-miR-r87-1 | Rat cytomegalovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gaagaa 7
         ||||||
Sbjct: 1 gaagaa 6
>VMR_0930 | rcmv-miR-r87-1 | Rat cytomegalovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gaagaa 7
         ||||||
Sbjct: 3 gaagaa 8
>VMR_0929 | rcmv-miR-r87-1 | Rat cytomegalovirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gaagaa 7
         ||||||
Sbjct: 3 gaagaa 8
>VMR_0521 | mdv2-miR-m29-5p | Mareks disease virus type 2
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tgaaga 6
         ||||||
Sbjct: 6 tgaaga 1
>VMR_0450 | mcv-miR-m1-5p | Merkel cell polyomavirus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gaagaa 7
         ||||||
Sbjct: 3 gaagaa 8
>VMR_0217 | hbv-miR-b8-5p | Herpes B virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tgaaga 6
         ||||||
Sbjct: 6 tgaaga 1
>VMR_0216 | hbv-miR-b8-5p | Herpes B virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tgaaga 6
         ||||||
Sbjct: 8 tgaaga 3
>VMR_0214 | hbv-miR-b8-5p | Herpes B virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tgaaga 6
         ||||||
Sbjct: 6 tgaaga 1
>VMR_0212 | hbv-miR-b8-5p | Herpes B virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tgaaga 6
         ||||||
Sbjct: 8 tgaaga 3
>VMR_0209 | hbv-miR-b8-5p | Herpes B virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tgaaga 6
         ||||||
Sbjct: 8 tgaaga 3
>VMR_0203 | hbv-miR-b8-5p | Herpes B virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tgaaga 6
         ||||||
Sbjct: 8 tgaaga 3
>VMR_0201 | hbv-miR-b8-3p | Herpes B virus
          Length = 8

 Score = 12.4 bits (6), Expect = 3.9
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tgaaga 6
         ||||||
Sbjct: 8 tgaaga 3
  Database: /home/users/abid/BLAST/VIRMIRNA
    Posted date:  Sep 8, 2014  7:41 PM
  Number of letters in database: 10,464
  Number of sequences in database:  1308
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 28
Number of extensions: 24
Number of successful extensions: 21
Number of sequences better than 100.0: 19
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 21
Length of query: 8
Length of database: 10,464
Length adjustment: 4
Effective length of query: 4
Effective length of database: 5232
Effective search space:    20928
Effective search space used:    20928
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)