BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-15-5p
(8 letters)
Database: /home/users/abid/BLAST/VIRMIRNA
1308 sequences; 10,464 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
VMR_1100 | rrv-miR-rr1-15-5p | Rhesus rhadinovirus 16 0.25
VMR_1099 | rrv-miR-rr1-15-5p | Rhesus rhadinovirus 16 0.25
VMR_1098 | rrv-miR-rr1-15-5p | Rhesus rhadinovirus 16 0.25
VMR_1097 | rrv-miR-rr1-15-5p | Rhesus rhadinovirus 16 0.25
VMR_1101 | rrv-miR-rr1-15-5p | Rhesus rhadinovirus 14 0.99
VMR_1157 | rrv-miR-rr1-9-3p | Rhesus rhadinovirus 14 0.99
VMR_1156 | rrv-miR-rr1-9-3p | Rhesus rhadinovirus 14 0.99
VMR_1154 | rrv-miR-rr1-9-3p | Rhesus rhadinovirus 14 0.99
VMR_1153 | rrv-miR-rr1-9-3p | Rhesus rhadinovirus 14 0.99
VMR_1152 | rrv-miR-rr1-9-3p | Rhesus rhadinovirus 14 0.99
VMR_0432 | mcmv-miR-m108-2-5p.1 | Mouse cytomegalovirus 14 0.99
VMR_1155 | rrv-miR-rr1-9-3p | Rhesus rhadinovirus 12 3.9
VMR_0948 | rhcmv-miR-rh183-2 | Rhesus Cytomegalovirus 12 3.9
VMR_0429 | mcmv-miR-m107-1-5p | Mouse cytomegalovirus 12 3.9
VMR_0405 | kshv-miR-k12-3-3p | Kaposi sarcoma-associated herpesv... 12 3.9
VMR_0404 | kshv-miR-k12-3* | Kaposi sarcoma-associated herpesvirus 12 3.9
VMR_0072 | dev-miR-d17-3p | Duck enteritis virus 12 3.9
>VMR_1100 | rrv-miR-rr1-15-5p | Rhesus rhadinovirus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgcggtca 8
||||||||
Sbjct: 1 tgcggtca 8
>VMR_1099 | rrv-miR-rr1-15-5p | Rhesus rhadinovirus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgcggtca 8
||||||||
Sbjct: 1 tgcggtca 8
>VMR_1098 | rrv-miR-rr1-15-5p | Rhesus rhadinovirus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgcggtca 8
||||||||
Sbjct: 1 tgcggtca 8
>VMR_1097 | rrv-miR-rr1-15-5p | Rhesus rhadinovirus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgcggtca 8
||||||||
Sbjct: 1 tgcggtca 8
>VMR_1101 | rrv-miR-rr1-15-5p | Rhesus rhadinovirus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcggtca 8
|||||||
Sbjct: 1 gcggtca 7
>VMR_1157 | rrv-miR-rr1-9-3p | Rhesus rhadinovirus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcggtca 8
|||||||
Sbjct: 2 gcggtca 8
>VMR_1156 | rrv-miR-rr1-9-3p | Rhesus rhadinovirus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcggtca 8
|||||||
Sbjct: 1 gcggtca 7
>VMR_1154 | rrv-miR-rr1-9-3p | Rhesus rhadinovirus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcggtca 8
|||||||
Sbjct: 1 gcggtca 7
>VMR_1153 | rrv-miR-rr1-9-3p | Rhesus rhadinovirus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcggtca 8
|||||||
Sbjct: 1 gcggtca 7
>VMR_1152 | rrv-miR-rr1-9-3p | Rhesus rhadinovirus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcggtca 8
|||||||
Sbjct: 1 gcggtca 7
>VMR_0432 | mcmv-miR-m108-2-5p.1 | Mouse cytomegalovirus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcggtca 8
|||||||
Sbjct: 1 gcggtca 7
>VMR_1155 | rrv-miR-rr1-9-3p | Rhesus rhadinovirus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 3 cggtca 8
||||||
Sbjct: 1 cggtca 6
>VMR_0948 | rhcmv-miR-rh183-2 | Rhesus Cytomegalovirus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 3 cggtca 8
||||||
Sbjct: 3 cggtca 8
>VMR_0429 | mcmv-miR-m107-1-5p | Mouse cytomegalovirus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 3 cggtca 8
||||||
Sbjct: 1 cggtca 6
>VMR_0405 | kshv-miR-k12-3-3p | Kaposi sarcoma-associated
herpesvirus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcggtc 7
||||||
Sbjct: 3 gcggtc 8
>VMR_0404 | kshv-miR-k12-3* | Kaposi sarcoma-associated
herpesvirus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcggtc 7
||||||
Sbjct: 3 gcggtc 8
>VMR_0072 | dev-miR-d17-3p | Duck enteritis virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcggtc 7
||||||
Sbjct: 6 gcggtc 1
Database: /home/users/abid/BLAST/VIRMIRNA
Posted date: Sep 8, 2014 7:41 PM
Number of letters in database: 10,464
Number of sequences in database: 1308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 34
Number of extensions: 19
Number of successful extensions: 17
Number of sequences better than 100.0: 17
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 17
Length of query: 8
Length of database: 10,464
Length adjustment: 4
Effective length of query: 4
Effective length of database: 5232
Effective search space: 20928
Effective search space used: 20928
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)