BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-4-5p
(8 letters)
Database: /home/users/abid/BLAST/VIRMIRNA
1308 sequences; 10,464 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
VMR_1122 | rrv-miR-rr1-4-5p | Rhesus rhadinovirus 16 0.25
VMR_1119 | rrv-miR-rr1-4-5p | Rhesus rhadinovirus 16 0.25
VMR_1113 | rrv-miR-rr1-4 | Rhesus rhadinovirus 16 0.25
VMR_0842 | prv-miR-9-3p | Pseudorabies virus 14 0.99
VMR_0841 | prv-miR-9-3p | Pseudorabies virus 14 0.99
VMR_0839 | prv-miR-9-3p | Pseudorabies virus 14 0.99
VMR_0838 | prv-miR-9-3p | Pseudorabies virus 14 0.99
VMR_0836 | prv-miR-9-3p | Pseudorabies virus 14 0.99
VMR_0835 | prv-miR-9-3p | Pseudorabies virus 14 0.99
VMR_0834 | prv-miR-9-3p | Pseudorabies virus 14 0.99
VMR_0833 | prv-miR-9-3p | Pseudorabies virus 14 0.99
VMR_0832 | prv-miR-9-3p | Pseudorabies virus 14 0.99
VMR_0738 | prv-miR-5-5p | Pseudorabies virus 12 3.9
VMR_0727 | prv-miR-5-5p | Pseudorabies virus 12 3.9
VMR_0723 | prv-miR-5-5p | Pseudorabies virus 12 3.9
VMR_0641 | prv-miR-11-1 | Pseudorabies virus 12 3.9
VMR_0843 | prv-miR-9-3p | Pseudorabies virus 12 3.9
VMR_0840 | prv-miR-9-3p | Pseudorabies virus 12 3.9
VMR_0837 | prv-miR-9-3p | Pseudorabies virus 12 3.9
VMR_0399 | kshv-miR-k12-12 | Kaposi sarcoma-associated herpesvirus 12 3.9
VMR_0249 | hcv-miR-199a* | Hepatitis C virus 12 3.9
VMR_0178 | hbv-miR-b22-3p | Herpes B virus 12 3.9
VMR_0177 | hbv-miR-b22-3p | Herpes B virus 12 3.9
VMR_0092 | dev-miR-d8-5p | Duck enteritis virus 12 3.9
>VMR_1122 | rrv-miR-rr1-4-5p | Rhesus rhadinovirus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tggggagg 8
||||||||
Sbjct: 1 tggggagg 8
>VMR_1119 | rrv-miR-rr1-4-5p | Rhesus rhadinovirus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tggggagg 8
||||||||
Sbjct: 1 tggggagg 8
>VMR_1113 | rrv-miR-rr1-4 | Rhesus rhadinovirus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tggggagg 8
||||||||
Sbjct: 1 tggggagg 8
>VMR_0842 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggggagg 8
|||||||
Sbjct: 7 ggggagg 1
>VMR_0841 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggggagg 8
|||||||
Sbjct: 8 ggggagg 2
>VMR_0839 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggggagg 8
|||||||
Sbjct: 7 ggggagg 1
>VMR_0838 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggggagg 8
|||||||
Sbjct: 8 ggggagg 2
>VMR_0836 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggggagg 8
|||||||
Sbjct: 7 ggggagg 1
>VMR_0835 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggggagg 8
|||||||
Sbjct: 8 ggggagg 2
>VMR_0834 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggggagg 8
|||||||
Sbjct: 7 ggggagg 1
>VMR_0833 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggggagg 8
|||||||
Sbjct: 8 ggggagg 2
>VMR_0832 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggggagg 8
|||||||
Sbjct: 7 ggggagg 1
>VMR_0738 | prv-miR-5-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 1 tgggga 6
>VMR_0727 | prv-miR-5-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 1 tgggga 6
>VMR_0723 | prv-miR-5-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgggga 6
||||||
Sbjct: 1 tgggga 6
>VMR_0641 | prv-miR-11-1 | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 3 gggagg 8
||||||
Sbjct: 1 gggagg 6
>VMR_0843 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggggag 7
||||||
Sbjct: 6 ggggag 1
>VMR_0840 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggggag 7
||||||
Sbjct: 6 ggggag 1
>VMR_0837 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggggag 7
||||||
Sbjct: 6 ggggag 1
>VMR_0399 | kshv-miR-k12-12 | Kaposi sarcoma-associated
herpesvirus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggag 7
||||||
Sbjct: 3 ggggag 8
>VMR_0249 | hcv-miR-199a* | Hepatitis C virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggggag 7
||||||
Sbjct: 6 ggggag 1
>VMR_0178 | hbv-miR-b22-3p | Herpes B virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggag 7
||||||
Sbjct: 3 ggggag 8
>VMR_0177 | hbv-miR-b22-3p | Herpes B virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggggag 7
||||||
Sbjct: 3 ggggag 8
>VMR_0092 | dev-miR-d8-5p | Duck enteritis virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 3 gggagg 8
||||||
Sbjct: 8 gggagg 3
Database: /home/users/abid/BLAST/VIRMIRNA
Posted date: Sep 8, 2014 7:41 PM
Number of letters in database: 10,464
Number of sequences in database: 1308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 42
Number of extensions: 27
Number of successful extensions: 24
Number of sequences better than 100.0: 24
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 24
Length of query: 8
Length of database: 10,464
Length adjustment: 4
Effective length of query: 4
Effective length of database: 5232
Effective search space: 20928
Effective search space used: 20928
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)