BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= kshv-miR-k12-12
(8 letters)
Database: /home/users/abid/BLAST/VIRMIRNA
1308 sequences; 10,464 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
VMR_0399 | kshv-miR-k12-12 | Kaposi sarcoma-associated herpesvirus 16 0.25
VMR_0843 | prv-miR-9-3p | Pseudorabies virus 14 0.99
VMR_0842 | prv-miR-9-3p | Pseudorabies virus 14 0.99
VMR_0840 | prv-miR-9-3p | Pseudorabies virus 14 0.99
VMR_0839 | prv-miR-9-3p | Pseudorabies virus 14 0.99
VMR_0837 | prv-miR-9-3p | Pseudorabies virus 14 0.99
VMR_0836 | prv-miR-9-3p | Pseudorabies virus 14 0.99
VMR_0834 | prv-miR-9-3p | Pseudorabies virus 14 0.99
VMR_0832 | prv-miR-9-3p | Pseudorabies virus 14 0.99
VMR_0997 | rlcv-miR-rl1-22-5p | Rhesus lymphocryptovirus 12 3.9
VMR_0995 | rlcv-miR-rl1-22-5p | Rhesus lymphocryptovirus 12 3.9
VMR_0819 | prv-miR-8-5p | Pseudorabies virus 12 3.9
VMR_0817 | prv-miR-8-5p | Pseudorabies virus 12 3.9
VMR_0813 | prv-miR-8-5p | Pseudorabies virus 12 3.9
VMR_0810 | prv-miR-8-5p | Pseudorabies virus 12 3.9
VMR_0804 | prv-miR-8-5p | Pseudorabies virus 12 3.9
VMR_0795 | prv-miR-8-5p | Pseudorabies virus 12 3.9
VMR_0841 | prv-miR-9-3p | Pseudorabies virus 12 3.9
VMR_0838 | prv-miR-9-3p | Pseudorabies virus 12 3.9
VMR_0835 | prv-miR-9-3p | Pseudorabies virus 12 3.9
VMR_0833 | prv-miR-9-3p | Pseudorabies virus 12 3.9
VMR_0465 | mdv1-miR-m3* | Mareks disease virus type 1 12 3.9
VMR_0249 | hcv-miR-199a* | Hepatitis C virus 12 3.9
VMR_0178 | hbv-miR-b22-3p | Herpes B virus 12 3.9
VMR_0177 | hbv-miR-b22-3p | Herpes B virus 12 3.9
>VMR_0399 | kshv-miR-k12-12 | Kaposi sarcoma-associated
herpesvirus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgggggag 8
||||||||
Sbjct: 1 tgggggag 8
>VMR_0843 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gggggag 8
|||||||
Sbjct: 7 gggggag 1
>VMR_0842 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gggggag 8
|||||||
Sbjct: 8 gggggag 2
>VMR_0840 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gggggag 8
|||||||
Sbjct: 7 gggggag 1
>VMR_0839 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gggggag 8
|||||||
Sbjct: 8 gggggag 2
>VMR_0837 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gggggag 8
|||||||
Sbjct: 7 gggggag 1
>VMR_0836 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gggggag 8
|||||||
Sbjct: 8 gggggag 2
>VMR_0834 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gggggag 8
|||||||
Sbjct: 8 gggggag 2
>VMR_0832 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gggggag 8
|||||||
Sbjct: 8 gggggag 2
>VMR_0997 | rlcv-miR-rl1-22-5p | Rhesus lymphocryptovirus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tggggg 6
||||||
Sbjct: 3 tggggg 8
>VMR_0995 | rlcv-miR-rl1-22-5p | Rhesus lymphocryptovirus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tggggg 6
||||||
Sbjct: 3 tggggg 8
>VMR_0819 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tggggg 6
||||||
Sbjct: 1 tggggg 6
>VMR_0817 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tggggg 6
||||||
Sbjct: 1 tggggg 6
>VMR_0813 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tggggg 6
||||||
Sbjct: 1 tggggg 6
>VMR_0810 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tggggg 6
||||||
Sbjct: 1 tggggg 6
>VMR_0804 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tggggg 6
||||||
Sbjct: 1 tggggg 6
>VMR_0795 | prv-miR-8-5p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tggggg 6
||||||
Sbjct: 1 tggggg 6
>VMR_0841 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 3 ggggag 8
||||||
Sbjct: 8 ggggag 3
>VMR_0838 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 3 ggggag 8
||||||
Sbjct: 8 ggggag 3
>VMR_0835 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 3 ggggag 8
||||||
Sbjct: 8 ggggag 3
>VMR_0833 | prv-miR-9-3p | Pseudorabies virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 3 ggggag 8
||||||
Sbjct: 8 ggggag 3
>VMR_0465 | mdv1-miR-m3* | Mareks disease virus type 1
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tggggg 6
||||||
Sbjct: 1 tggggg 6
>VMR_0249 | hcv-miR-199a* | Hepatitis C virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 3 ggggag 8
||||||
Sbjct: 6 ggggag 1
>VMR_0178 | hbv-miR-b22-3p | Herpes B virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 3 ggggag 8
||||||
Sbjct: 3 ggggag 8
>VMR_0177 | hbv-miR-b22-3p | Herpes B virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 3 ggggag 8
||||||
Sbjct: 3 ggggag 8
Database: /home/users/abid/BLAST/VIRMIRNA
Posted date: Sep 8, 2014 7:41 PM
Number of letters in database: 10,464
Number of sequences in database: 1308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 47
Number of extensions: 37
Number of successful extensions: 25
Number of sequences better than 100.0: 25
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 25
Length of query: 8
Length of database: 10,464
Length adjustment: 4
Effective length of query: 4
Effective length of database: 5232
Effective search space: 20928
Effective search space used: 20928
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)