BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= kun-miR-1
(8 letters)
Database: /home/users/abid/BLAST/VIRMIRNA
1308 sequences; 10,464 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
VMR_0420 | kun-miR-1 | West Nile Virus 16 0.25
VMR_1055 | rlcv-miR-rl1-5-3p | Rhesus lymphocryptovirus 14 0.99
VMR_1024 | rlcv-miR-rl1-3 | Rhesus lymphocryptovirus 14 0.99
VMR_0126 | ebv-miR-bart3-3p | Epstein Barr virus 14 0.99
VMR_0124 | ebv-miR-bart3 | Epstein Barr virus 14 0.99
VMR_1103 | rrv-miR-rr1-1-5p | Rhesus rhadinovirus 12 3.9
VMR_0969 | rlcv-miR-rl1-14-3p | Rhesus lymphocryptovirus 12 3.9
VMR_0892 | rcmv-miR-r111.1-1 | Rat cytomegalovirus 12 3.9
VMR_0891 | rcmv-miR-r111.1-1 | Rat cytomegalovirus 12 3.9
VMR_0889 | rcmv-miR-r111.1-1 | Rat cytomegalovirus 12 3.9
VMR_0502 | mdv2-miR-m21 | Mareks disease virus type 2 12 3.9
VMR_0371 | hvt-miR-h5 | Herpesvirus of turkeys 12 3.9
VMR_0302 | hsv1-miR-h2* | Herpes simplex virus 1 12 3.9
VMR_0296 | hsv1-miR-h14-5p | Herpes simplex virus 1 12 3.9
VMR_0049 | blv-miR-b4-3p | Bovine leukemia virus 12 3.9
VMR_0047 | blv-miR-b4 | Bovine leukemia virus 12 3.9
VMR_0050 | blv-miR-b4-3p | Bovine leukemia virus 12 3.9
VMR_0048 | blv-miR-b4-3p | Bovine leukemia virus 12 3.9
>VMR_0420 | kun-miR-1 | West Nile Virus
Length = 8
Score = 16.4 bits (8), Expect = 0.25
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tggtgcga 8
||||||||
Sbjct: 1 tggtgcga 8
>VMR_1055 | rlcv-miR-rl1-5-3p | Rhesus lymphocryptovirus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tggtgcg 7
|||||||
Sbjct: 7 tggtgcg 1
>VMR_1024 | rlcv-miR-rl1-3 | Rhesus lymphocryptovirus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggtgcga 8
|||||||
Sbjct: 7 ggtgcga 1
>VMR_0126 | ebv-miR-bart3-3p | Epstein Barr virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tggtgcg 7
|||||||
Sbjct: 7 tggtgcg 1
>VMR_0124 | ebv-miR-bart3 | Epstein Barr virus
Length = 8
Score = 14.4 bits (7), Expect = 0.99
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tggtgcg 7
|||||||
Sbjct: 7 tggtgcg 1
>VMR_1103 | rrv-miR-rr1-1-5p | Rhesus rhadinovirus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 3 gtgcga 8
||||||
Sbjct: 8 gtgcga 3
>VMR_0969 | rlcv-miR-rl1-14-3p | Rhesus lymphocryptovirus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 3 gtgcga 8
||||||
Sbjct: 6 gtgcga 1
>VMR_0892 | rcmv-miR-r111.1-1 | Rat cytomegalovirus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtgcg 7
||||||
Sbjct: 6 ggtgcg 1
>VMR_0891 | rcmv-miR-r111.1-1 | Rat cytomegalovirus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtgcg 7
||||||
Sbjct: 6 ggtgcg 1
>VMR_0889 | rcmv-miR-r111.1-1 | Rat cytomegalovirus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggtgcg 7
||||||
Sbjct: 6 ggtgcg 1
>VMR_0502 | mdv2-miR-m21 | Mareks disease virus type 2
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tggtgc 6
||||||
Sbjct: 8 tggtgc 3
>VMR_0371 | hvt-miR-h5 | Herpesvirus of turkeys
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tggtgc 6
||||||
Sbjct: 3 tggtgc 8
>VMR_0302 | hsv1-miR-h2* | Herpes simplex virus 1
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 3 gtgcga 8
||||||
Sbjct: 6 gtgcga 1
>VMR_0296 | hsv1-miR-h14-5p | Herpes simplex virus 1
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 3 gtgcga 8
||||||
Sbjct: 8 gtgcga 3
>VMR_0049 | blv-miR-b4-3p | Bovine leukemia virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tggtgc 6
||||||
Sbjct: 8 tggtgc 3
>VMR_0047 | blv-miR-b4 | Bovine leukemia virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tggtgc 6
||||||
Sbjct: 8 tggtgc 3
>VMR_0050 | blv-miR-b4-3p | Bovine leukemia virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tggtgc 6
||||||
Sbjct: 8 tggtgc 3
>VMR_0048 | blv-miR-b4-3p | Bovine leukemia virus
Length = 8
Score = 12.4 bits (6), Expect = 3.9
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tggtgc 6
||||||
Sbjct: 8 tggtgc 3
Database: /home/users/abid/BLAST/VIRMIRNA
Posted date: Sep 8, 2014 7:41 PM
Number of letters in database: 10,464
Number of sequences in database: 1308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1308
Number of Hits to DB: 27
Number of extensions: 21
Number of successful extensions: 18
Number of sequences better than 100.0: 18
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 18
Length of query: 8
Length of database: 10,464
Length adjustment: 4
Effective length of query: 4
Effective length of database: 5232
Effective search space: 20928
Effective search space used: 20928
X1: 4 ( 7.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 4 ( 8.4 bits)
S2: 4 ( 8.4 bits)
